Variant report

Variant	rs73367376
Chromosome Location	chr10:116615806-116615807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:116615487-116617287	SK-N-SH	brain:	n/a	n/a
2	STAT3	chr10:116615782-116616049	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr10:116615602-116616611	IMR90	lung:	n/a	n/a
4	FOS	chr10:116615626-116615853	MCF10A-Er-Src	breast:	n/a	chr10:116615706-116615715
5	FOS	chr10:116615648-116615839	MCF10A-Er-Src	breast:	n/a	chr10:116615706-116615715
6	FOS	chr10:116615591-116616752	MCF10A-Er-Src	breast:	n/a	chr10:116616546-116616557 chr10:116615706-116615715
7	POLR2A	chr10:116615679-116615831	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116611040..116612885-chr10:116615374..116616908,2	K562	blood:

Variant related genes	Relation type
FAM160B1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60690229	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363907	0.87[AFR][1000 genomes]
rs73363913	0.87[AFR][1000 genomes]
rs73363916	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:116583200-116616800	Weak transcription	K562	blood
3	chr10:116589600-116626600	Weak transcription	Stomach Mucosa	stomach
4	chr10:116589600-116640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:116590800-116616600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr10:116590800-116624400	Strong transcription	Dnd41	blood
7	chr10:116590800-116625600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:116590800-116626400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:116591000-116616000	Strong transcription	Placenta	Placenta
10	chr10:116591000-116619400	Strong transcription	Fetal Muscle Leg	muscle
11	chr10:116591000-116624800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:116591000-116626600	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:116592400-116625200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:116592600-116616600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:116593000-116616800	Strong transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:116595800-116623000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:116596000-116617000	Strong transcription	Adipose Nuclei	Adipose
18	chr10:116602600-116624800	Strong transcription	Duodenum Mucosa	Duodenum
19	chr10:116604800-116627200	Weak transcription	Small Intestine	intestine
20	chr10:116606200-116616000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:116606200-116624200	Weak transcription	Gastric	stomach
22	chr10:116606600-116619800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:116609200-116619000	Weak transcription	Right Ventricle	heart
24	chr10:116609400-116623400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:116609600-116619000	Weak transcription	Aorta	Aorta
26	chr10:116609600-116634800	Weak transcription	Spleen	Spleen
27	chr10:116609600-116639400	Weak transcription	Pancreas	Pancrea
28	chr10:116609800-116616600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:116610200-116625000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:116610200-116625000	Weak transcription	Colonic Mucosa	Colon
31	chr10:116610200-116625400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:116610200-116625600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:116610200-116634600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:116610400-116617600	Weak transcription	Fetal Brain Male	brain
35	chr10:116610400-116617600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:116610400-116628000	Weak transcription	Esophagus	oesophagus
37	chr10:116610600-116628000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:116610800-116616600	Weak transcription	Fetal Stomach	stomach
39	chr10:116610800-116619000	Weak transcription	Brain Germinal Matrix	brain
40	chr10:116610800-116619000	Weak transcription	Ovary	ovary
41	chr10:116611000-116616600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:116611000-116619000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:116611400-116624600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:116611600-116641000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:116611800-116617200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr10:116612400-116619000	Weak transcription	Lung	lung
47	chr10:116612400-116619000	Weak transcription	Thymus	Thymus
48	chr10:116612400-116625800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:116612800-116619000	Weak transcription	Psoas Muscle	Psoas
50	chr10:116612800-116625600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links