Variant report

Variant	rs60690229
Chromosome Location	chr10:116592707-116592708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116592314..116594940-chr10:116598263..116599830,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1116508	1.00[EUR][1000 genomes]
rs11812214	1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs56859887	1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	1.00[EUR][1000 genomes]
rs57627999	1.00[EUR][1000 genomes]
rs57955640	1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs59660416	1.00[EUR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60738938	1.00[EUR][1000 genomes]
rs60805990	1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[EUR][1000 genomes]
rs7087895	1.00[EUR][1000 genomes]
rs7093074	1.00[EUR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7100519	1.00[EUR][1000 genomes]
rs7101145	1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	1.00[EUR][1000 genomes]
rs73357618	1.00[EUR][1000 genomes]
rs73357630	1.00[EUR][1000 genomes]
rs73361960	1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73361981	1.00[EUR][1000 genomes]
rs73361987	1.00[EUR][1000 genomes]
rs73362046	1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73363907	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73363913	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73363916	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367376	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367377	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367389	1.00[EUR][1000 genomes]
rs73368776	1.00[EUR][1000 genomes]
rs73370603	1.00[EUR][1000 genomes]
rs73370613	1.00[EUR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[EUR][1000 genomes]
rs7899872	1.00[EUR][1000 genomes]
rs7907892	1.00[EUR][1000 genomes]
rs7910281	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]
rs7921864	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116582600-116596800	Weak transcription	Lung	lung
2	chr10:116582600-116597000	Weak transcription	Spleen	Spleen
3	chr10:116582800-116593000	Weak transcription	Colonic Mucosa	Colon
4	chr10:116582800-116604400	Weak transcription	Esophagus	oesophagus
5	chr10:116583000-116593200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:116583000-116594800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:116583000-116596200	Weak transcription	Brain Substantia Nigra	brain
8	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:116583200-116592800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:116583200-116594000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:116583200-116616800	Weak transcription	K562	blood
12	chr10:116583800-116601600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:116584200-116593000	Weak transcription	Thymus	Thymus
14	chr10:116584200-116593400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:116584400-116597400	Weak transcription	Fetal Brain Male	brain
16	chr10:116584600-116608400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr10:116584800-116593200	Weak transcription	Fetal Brain Female	brain
18	chr10:116585800-116596400	Weak transcription	Brain Germinal Matrix	brain
19	chr10:116586000-116593000	Weak transcription	HepG2	liver
20	chr10:116586000-116594600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:116586000-116604800	Weak transcription	Fetal Heart	heart
22	chr10:116586200-116600200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:116586400-116592800	Weak transcription	Hela-S3	cervix
24	chr10:116586400-116593000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:116587200-116594600	Weak transcription	HSMMtube	muscle
26	chr10:116588000-116592800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:116588200-116592800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:116588400-116592800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:116588600-116596000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:116588800-116605600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:116589200-116593000	Weak transcription	Psoas Muscle	Psoas
32	chr10:116589200-116609000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:116589400-116596200	Weak transcription	Ovary	ovary
34	chr10:116589400-116602800	Weak transcription	Gastric	stomach
35	chr10:116589600-116592800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:116589600-116593000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:116589600-116593000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:116589600-116596200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:116589600-116602600	Weak transcription	Pancreas	Pancrea
40	chr10:116589600-116609000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:116589600-116626600	Weak transcription	Stomach Mucosa	stomach
42	chr10:116589600-116640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:116589800-116592800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:116589800-116593000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:116589800-116594600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:116590000-116593000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:116590000-116604400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:116590200-116614400	Strong transcription	HSMM	muscle
49	chr10:116590400-116592800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:116590400-116594600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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