Variant report

Variant	rs73357630
Chromosome Location	chr10:116540558-116540559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1116508	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11812214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs56859887	1.00[EUR][1000 genomes]
rs57013647	0.95[AFR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57627999	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57955640	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs59660416	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60690229	1.00[EUR][1000 genomes]
rs60738938	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60805990	1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[EUR][1000 genomes]
rs7087895	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093074	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7095508	1.00[EUR][1000 genomes]
rs7095664	1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7100519	1.00[EUR][1000 genomes]
rs7101145	1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	1.00[EUR][1000 genomes]
rs73357618	1.00[EUR][1000 genomes]
rs73361960	1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73361981	1.00[EUR][1000 genomes]
rs73361987	1.00[EUR][1000 genomes]
rs73362028	1.00[EUR][1000 genomes]
rs73362046	1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73362835	1.00[EUR][1000 genomes]
rs73362837	1.00[EUR][1000 genomes]
rs73362841	1.00[EUR][1000 genomes]
rs73362848	1.00[EUR][1000 genomes]
rs73363907	1.00[EUR][1000 genomes]
rs73363913	1.00[EUR][1000 genomes]
rs73363916	1.00[EUR][1000 genomes]
rs73367377	1.00[EUR][1000 genomes]
rs73367389	1.00[EUR][1000 genomes]
rs73368776	1.00[EUR][1000 genomes]
rs73370603	1.00[EUR][1000 genomes]
rs73370613	1.00[EUR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[EUR][1000 genomes]
rs7899192	1.00[EUR][1000 genomes]
rs7899872	1.00[EUR][1000 genomes]
rs7907892	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910281	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]
rs7921864	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116533400-116548600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr10:116538200-116540800	Enhancers	Fetal Lung	lung
3	chr10:116538400-116540800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:116538400-116540800	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr10:116538400-116541000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:116538400-116541000	Enhancers	HMEC	breast
7	chr10:116538400-116541000	Enhancers	HUVEC	blood vessel
8	chr10:116538400-116541200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:116538600-116541000	Enhancers	NHEK	skin
10	chr10:116539000-116540600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:116539000-116540600	Enhancers	Duodenum Mucosa	Duodenum
12	chr10:116539000-116540800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:116539000-116540800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:116539000-116541000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:116539000-116541000	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr10:116539000-116541000	Enhancers	NH-A	brain
17	chr10:116539200-116540600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:116539200-116540600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:116539200-116540800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:116539400-116540800	Enhancers	Fetal Kidney	kidney
21	chr10:116539400-116540800	Enhancers	Stomach Mucosa	stomach
22	chr10:116539400-116540800	Enhancers	HSMM	muscle
23	chr10:116539400-116540800	Enhancers	NHDF-Ad	bronchial
24	chr10:116539400-116540800	Enhancers	Osteobl	bone
25	chr10:116539600-116540600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:116539600-116540800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr10:116539600-116540800	Enhancers	Primary hematopoietic stem cells	blood
28	chr10:116539600-116540800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:116539600-116541000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:116539600-116541000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:116539800-116540600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr10:116539800-116540600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr10:116539800-116540600	Enhancers	Aorta	Aorta
34	chr10:116539800-116540600	Enhancers	Ovary	ovary
35	chr10:116539800-116540600	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr10:116539800-116540600	Enhancers	HSMMtube	muscle
37	chr10:116539800-116540800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:116539800-116540800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:116539800-116540800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr10:116539800-116540800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:116539800-116540800	Enhancers	NHLF	lung
42	chr10:116539800-116541000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:116539800-116541000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:116540000-116540600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:116540000-116540600	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr10:116540000-116540600	Enhancers	Small Intestine	intestine
47	chr10:116540000-116540800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:116540000-116540800	Flanking Active TSS	A549	lung
49	chr10:116540000-116540800	Flanking Active TSS	Hela-S3	cervix
50	chr10:116540200-116540600	Enhancers	HUES48 Cell Line	embryonic stem cell

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