Variant report

Variant	rs73357614
Chromosome Location	chr10:116525852-116525853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116524589..116526478-chr10:116585947..116587960,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM160B1-4	chr10:116525691-116525910	ucscGeneNc_uc001lca_1

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1116508	1.00[EUR][1000 genomes]
rs11812214	1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs56859887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	1.00[EUR][1000 genomes]
rs57627999	1.00[EUR][1000 genomes]
rs57955640	1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs59660416	1.00[EUR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60690229	1.00[EUR][1000 genomes]
rs60738938	1.00[EUR][1000 genomes]
rs60805990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7087895	1.00[EUR][1000 genomes]
rs7093074	1.00[EUR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7095508	1.00[EUR][1000 genomes]
rs7095664	1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7100519	1.00[EUR][1000 genomes]
rs7101145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357618	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357630	1.00[EUR][1000 genomes]
rs73361960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73361981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73361987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73362835	1.00[EUR][1000 genomes]
rs73362837	1.00[EUR][1000 genomes]
rs73362841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363907	1.00[EUR][1000 genomes]
rs73363913	1.00[EUR][1000 genomes]
rs73363916	1.00[EUR][1000 genomes]
rs73367377	1.00[EUR][1000 genomes]
rs73367389	1.00[EUR][1000 genomes]
rs73368776	1.00[EUR][1000 genomes]
rs73370603	1.00[EUR][1000 genomes]
rs73370613	1.00[EUR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74158019	1.00[EUR][1000 genomes]
rs7899192	1.00[EUR][1000 genomes]
rs7899872	1.00[EUR][1000 genomes]
rs7907892	1.00[EUR][1000 genomes]
rs7910281	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]
rs7921864	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116513800-116527000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:116515000-116527400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116515600-116526200	Weak transcription	Fetal Intestine Small	intestine
4	chr10:116518000-116526400	Weak transcription	Brain Anterior Caudate	brain
5	chr10:116518400-116526400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:116521600-116526200	Weak transcription	Right Ventricle	heart
7	chr10:116524400-116526000	Enhancers	Adipose Nuclei	Adipose
8	chr10:116524400-116526000	Enhancers	Fetal Heart	heart
9	chr10:116524600-116526200	Enhancers	Fetal Intestine Large	intestine
10	chr10:116524800-116526200	Weak transcription	Pancreas	Pancrea
11	chr10:116525000-116526000	Weak transcription	Psoas Muscle	Psoas
12	chr10:116525000-116526200	Weak transcription	Left Ventricle	heart
13	chr10:116525200-116526400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:116525400-116526400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:116525600-116526000	Enhancers	Duodenum Mucosa	Duodenum
16	chr10:116525600-116526200	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr10:116525600-116526400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:116525600-116526400	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr10:116525600-116528400	Active TSS	Right Atrium	heart
20	chr10:116525800-116526200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:116525800-116526200	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum

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