Variant report

Variant	rs73362835
Chromosome Location	chr10:116362879-116362880
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1116508	1.00[EUR][1000 genomes]
rs11812214	1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	1.00[EUR][1000 genomes]
rs57627999	1.00[EUR][1000 genomes]
rs57955640	1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60805990	1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[EUR][1000 genomes]
rs7087895	1.00[EUR][1000 genomes]
rs7093074	1.00[EUR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7095508	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7095664	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7101145	1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	1.00[EUR][1000 genomes]
rs73357618	1.00[EUR][1000 genomes]
rs73357630	1.00[EUR][1000 genomes]
rs73361960	1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73362028	1.00[EUR][1000 genomes]
rs73362046	1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73362837	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362841	1.00[EUR][1000 genomes]
rs73362848	1.00[EUR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[EUR][1000 genomes]
rs74158019	1.00[EUR][1000 genomes]
rs7899192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907892	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116345000-116382400	Weak transcription	HSMM	muscle
2	chr10:116345800-116364000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:116352600-116367600	Weak transcription	Ovary	ovary
4	chr10:116353000-116364200	Weak transcription	Psoas Muscle	Psoas
5	chr10:116353200-116364600	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:116353400-116364000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:116354600-116364600	Weak transcription	Gastric	stomach
8	chr10:116354800-116378600	Weak transcription	Fetal Stomach	stomach
9	chr10:116355000-116363000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:116355400-116364200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:116355400-116371000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:116356400-116364000	Weak transcription	Fetal Kidney	kidney
13	chr10:116356400-116364200	Weak transcription	Brain Substantia Nigra	brain
14	chr10:116356600-116364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:116357000-116363000	Weak transcription	HepG2	liver
16	chr10:116357600-116364600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:116357600-116365600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:116357800-116364400	Weak transcription	Small Intestine	intestine
19	chr10:116358600-116363800	Weak transcription	Fetal Lung	lung
20	chr10:116358600-116364600	Weak transcription	Aorta	Aorta
21	chr10:116359200-116366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:116360000-116363800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:116360400-116363600	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:116360400-116364000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:116360600-116363800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:116360600-116364600	Weak transcription	Right Atrium	heart
27	chr10:116360600-116365400	Weak transcription	Esophagus	oesophagus
28	chr10:116360600-116370600	Weak transcription	Lung	lung
29	chr10:116360600-116380600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:116360800-116364400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:116361000-116364000	Weak transcription	Adipose Nuclei	Adipose
32	chr10:116361000-116364400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:116361200-116364800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr10:116361400-116379000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:116361600-116365400	Weak transcription	Fetal Intestine Small	intestine
36	chr10:116361600-116378200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:116361800-116363000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:116361800-116363000	Weak transcription	Left Ventricle	heart
39	chr10:116361800-116363800	Weak transcription	HSMMtube	muscle
40	chr10:116361800-116365200	Weak transcription	Pancreas	Pancrea
41	chr10:116361800-116365600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:116362000-116364200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:116362000-116364400	Enhancers	Fetal Heart	heart
44	chr10:116362400-116363800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:116362400-116364600	Weak transcription	Liver	Liver
46	chr10:116362400-116366000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:116362600-116363000	Enhancers	Fetal Intestine Large	intestine
48	chr10:116362600-116363200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:116362600-116363200	Enhancers	Right Ventricle	heart
50	chr10:116362600-116365400	Enhancers	Brain Angular Gyrus	brain

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