Variant report

Variant	rs73362848
Chromosome Location	chr10:116382318-116382319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116380101..116382698-chr10:116387153..116390968,3	MCF-7	breast:
2	chr10:116381677..116383578-chr10:116393467..116395747,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1116508	1.00[EUR][1000 genomes]
rs11812214	1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs56859887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	1.00[EUR][1000 genomes]
rs57627999	1.00[EUR][1000 genomes]
rs57955640	1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs59660416	1.00[EUR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60738938	1.00[EUR][1000 genomes]
rs60805990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7087895	1.00[EUR][1000 genomes]
rs7093074	1.00[EUR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7095508	1.00[EUR][1000 genomes]
rs7095664	1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7101145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357630	1.00[EUR][1000 genomes]
rs73361960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73361981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73361987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73362835	1.00[EUR][1000 genomes]
rs73362837	1.00[EUR][1000 genomes]
rs73362841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363907	1.00[EUR][1000 genomes]
rs73363913	1.00[EUR][1000 genomes]
rs73363916	1.00[EUR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74158019	1.00[EUR][1000 genomes]
rs7899192	1.00[EUR][1000 genomes]
rs7907892	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116345000-116382400	Weak transcription	HSMM	muscle
2	chr10:116365000-116382400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:116365400-116382400	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:116367800-116382600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:116370600-116382600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:116371800-116382400	Weak transcription	HMEC	breast
7	chr10:116372000-116382400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:116372000-116383600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:116372400-116382600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:116374400-116382400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:116374400-116382400	Weak transcription	Fetal Intestine Small	intestine
12	chr10:116375800-116382600	Weak transcription	Fetal Intestine Large	intestine
13	chr10:116376200-116382400	Weak transcription	Lung	lung
14	chr10:116376400-116382400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:116376400-116382400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:116376400-116382400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:116376400-116382600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:116376400-116383000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:116376600-116382400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:116378200-116385000	Enhancers	Right Atrium	heart
21	chr10:116378600-116382400	Weak transcription	Brain Anterior Caudate	brain
22	chr10:116378800-116382600	Weak transcription	HSMMtube	muscle
23	chr10:116378800-116382800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:116378800-116383000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:116378800-116391200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:116379000-116382400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:116379000-116382600	Weak transcription	Liver	Liver
28	chr10:116379400-116382400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:116379400-116382400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:116379400-116383000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:116379600-116382800	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:116379600-116383600	Weak transcription	Aorta	Aorta
33	chr10:116379600-116383600	Enhancers	Fetal Heart	heart
34	chr10:116380000-116384200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:116380200-116382400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:116380600-116382400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr10:116381200-116385000	Enhancers	Left Ventricle	heart
38	chr10:116381400-116383400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:116381400-116385200	Enhancers	Stomach Mucosa	stomach
40	chr10:116381800-116383400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:116381800-116383400	Enhancers	Ovary	ovary
42	chr10:116382000-116383400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr10:116382000-116384000	Weak transcription	Pancreas	Pancrea
44	chr10:116382000-116384400	Enhancers	Gastric	stomach
45	chr10:116382000-116385000	Weak transcription	Right Ventricle	heart
46	chr10:116382000-116385600	Enhancers	HepG2	liver
47	chr10:116382200-116383600	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr10:116382200-116383600	Enhancers	Fetal Kidney	kidney
49	chr10:116382200-116384000	Enhancers	Adipose Nuclei	Adipose
50	chr10:116382200-116384200	Weak transcription	Esophagus	oesophagus

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