Variant report

Variant	rs7101145
Chromosome Location	chr10:116389090-116389091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116380101..116382698-chr10:116387153..116390968,3	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1116508	1.00[EUR][1000 genomes]
rs11812214	1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs56859887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	1.00[EUR][1000 genomes]
rs57627999	1.00[EUR][1000 genomes]
rs57955640	1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs59660416	1.00[EUR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60690229	1.00[EUR][1000 genomes]
rs60738938	1.00[EUR][1000 genomes]
rs60805990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7087895	1.00[EUR][1000 genomes]
rs7093074	1.00[EUR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7095508	1.00[EUR][1000 genomes]
rs7095664	1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7100519	1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357630	1.00[EUR][1000 genomes]
rs73361960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73361981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73361987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73362835	1.00[EUR][1000 genomes]
rs73362837	1.00[EUR][1000 genomes]
rs73362841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363907	1.00[EUR][1000 genomes]
rs73363913	1.00[EUR][1000 genomes]
rs73363916	1.00[EUR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74158019	1.00[EUR][1000 genomes]
rs7899192	1.00[EUR][1000 genomes]
rs7907892	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116378800-116391200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:116383200-116391200	Weak transcription	Lung	lung
3	chr10:116384000-116391000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:116384200-116390800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:116384400-116389200	Weak transcription	Esophagus	oesophagus
6	chr10:116384400-116389600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:116384400-116390200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:116384400-116390400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:116385000-116390400	Weak transcription	HUVEC	blood vessel
10	chr10:116385200-116391000	Weak transcription	Stomach Mucosa	stomach
11	chr10:116385200-116391200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:116385400-116389600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:116385400-116390800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:116385400-116391000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:116385600-116389200	Weak transcription	HepG2	liver
16	chr10:116385600-116389400	Weak transcription	Hela-S3	cervix
17	chr10:116385600-116389600	Weak transcription	A549	lung
18	chr10:116385600-116390200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:116385600-116390800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:116386200-116391000	Weak transcription	Gastric	stomach
21	chr10:116386800-116389200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr10:116386800-116389400	Weak transcription	Adipose Nuclei	Adipose
23	chr10:116386800-116391000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:116387200-116389200	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:116387200-116389400	Weak transcription	HSMM	muscle
26	chr10:116387200-116389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:116387400-116389200	Weak transcription	HSMMtube	muscle
28	chr10:116387400-116389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:116387600-116389600	Weak transcription	HMEC	breast
30	chr10:116387600-116389600	Weak transcription	NHEK	skin
31	chr10:116388200-116392600	Active TSS	Right Ventricle	heart
32	chr10:116388400-116389200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:116388600-116389600	Enhancers	Right Atrium	heart
34	chr10:116388800-116389200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr10:116388800-116389200	Active TSS	Left Ventricle	heart
36	chr10:116388800-116389600	Flanking Active TSS	Fetal Heart	heart
37	chr10:116388800-116390000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
38	chr10:116388800-116390800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr10:116389000-116389200	Enhancers	Pancreas	Pancrea
40	chr10:116389000-116389400	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr10:116389000-116390000	Flanking Active TSS	Liver	Liver

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