Variant report

Variant	rs60092663
Chromosome Location	chr10:116443333-116443334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1116508	1.00[EUR][1000 genomes]
rs11812214	1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs56859887	1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	1.00[EUR][1000 genomes]
rs57627999	1.00[EUR][1000 genomes]
rs57955640	1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs59660416	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60690229	1.00[EUR][1000 genomes]
rs60738938	1.00[EUR][1000 genomes]
rs60805990	1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[EUR][1000 genomes]
rs7083553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7087895	1.00[EUR][1000 genomes]
rs7093074	1.00[EUR][1000 genomes]
rs7093923	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7095508	1.00[EUR][1000 genomes]
rs7095664	1.00[EUR][1000 genomes]
rs7097805	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100519	1.00[EUR][1000 genomes]
rs7101145	1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	1.00[EUR][1000 genomes]
rs73357618	1.00[EUR][1000 genomes]
rs73357630	1.00[EUR][1000 genomes]
rs73361960	1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73361981	1.00[EUR][1000 genomes]
rs73361987	1.00[EUR][1000 genomes]
rs73362028	1.00[EUR][1000 genomes]
rs73362046	1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73362835	1.00[EUR][1000 genomes]
rs73362837	1.00[EUR][1000 genomes]
rs73362841	1.00[EUR][1000 genomes]
rs73362848	1.00[EUR][1000 genomes]
rs73363907	1.00[EUR][1000 genomes]
rs73363913	1.00[EUR][1000 genomes]
rs73363916	1.00[EUR][1000 genomes]
rs73367377	1.00[EUR][1000 genomes]
rs73367389	1.00[EUR][1000 genomes]
rs73371868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371874	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371876	1.00[EUR][1000 genomes]
rs73371880	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371882	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371883	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371890	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371894	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[EUR][1000 genomes]
rs74158019	1.00[EUR][1000 genomes]
rs7899192	1.00[EUR][1000 genomes]
rs7907892	1.00[EUR][1000 genomes]
rs7910281	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116431600-116444000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:116435000-116444000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:116438600-116444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:116439000-116444000	Weak transcription	NHDF-Ad	bronchial
5	chr10:116439000-116444600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:116439200-116443400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:116439800-116444000	Enhancers	Fetal Lung	lung
8	chr10:116441200-116444000	Enhancers	Stomach Mucosa	stomach
9	chr10:116441200-116445200	Flanking Active TSS	HUVEC	blood vessel
10	chr10:116441400-116443800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:116441400-116444000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:116441400-116444000	Flanking Active TSS	Fetal Heart	heart
13	chr10:116441400-116444200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:116441400-116444400	Active TSS	Psoas Muscle	Psoas
15	chr10:116441400-116445600	Enhancers	Fetal Brain Male	brain
16	chr10:116441400-116446200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:116441600-116443400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr10:116441600-116443600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:116441600-116444200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:116441600-116444600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:116441800-116443400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:116441800-116443400	Weak transcription	Gastric	stomach
23	chr10:116441800-116443400	Active TSS	Right Atrium	heart
24	chr10:116441800-116443400	Weak transcription	Hela-S3	cervix
25	chr10:116441800-116443600	Active TSS	Right Ventricle	heart
26	chr10:116441800-116444000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:116441800-116444000	Active TSS	Adipose Nuclei	Adipose
28	chr10:116441800-116444000	Active TSS	Left Ventricle	heart
29	chr10:116441800-116444000	Weak transcription	Ovary	ovary
30	chr10:116441800-116445200	Weak transcription	Brain Angular Gyrus	brain
31	chr10:116441800-116445600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:116441800-116450800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:116442000-116443400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:116442000-116443400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:116442000-116444400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:116442000-116444400	Flanking Active TSS	Fetal Brain Female	brain
37	chr10:116442200-116443600	Bivalent Enhancer	Brain Hippocampus Middle	brain
38	chr10:116442200-116444000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:116442400-116443400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:116442400-116443400	Active TSS	Stomach Smooth Muscle	stomach
41	chr10:116442400-116443600	Weak transcription	NHLF	lung
42	chr10:116442600-116443600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:116442600-116444200	Weak transcription	Fetal Kidney	kidney
44	chr10:116442600-116445400	Flanking Active TSS	A549	lung
45	chr10:116442600-116445600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:116442800-116443600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:116442800-116443600	Enhancers	Rectal Smooth Muscle	rectum
48	chr10:116442800-116443600	Flanking Active TSS	NHEK	skin
49	chr10:116442800-116443800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr10:116442800-116444600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links