Variant report

Variant	rs73367389
Chromosome Location	chr10:116641881-116641882
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116639834..116644233-chr10:116697414..116700996,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165832	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1116508	1.00[EUR][1000 genomes]
rs11812214	1.00[EUR][1000 genomes]
rs1264777	1.00[EUR][1000 genomes]
rs1264800	1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs56859887	1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57196389	1.00[AMR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	1.00[EUR][1000 genomes]
rs57627999	1.00[EUR][1000 genomes]
rs57955640	1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs59660416	1.00[EUR][1000 genomes]
rs59919921	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60690229	1.00[EUR][1000 genomes]
rs60738938	1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs61479736	1.00[AMR][1000 genomes]
rs7072302	1.00[AMR][1000 genomes]
rs7087895	1.00[EUR][1000 genomes]
rs7089161	1.00[EUR][1000 genomes]
rs7091595	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093074	1.00[EUR][1000 genomes]
rs7093407	1.00[AMR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7100519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100802	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	1.00[EUR][1000 genomes]
rs73357618	1.00[EUR][1000 genomes]
rs73357630	1.00[EUR][1000 genomes]
rs73361960	1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73361981	1.00[EUR][1000 genomes]
rs73361987	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73363907	1.00[EUR][1000 genomes]
rs73363913	1.00[EUR][1000 genomes]
rs73363916	1.00[EUR][1000 genomes]
rs73367377	1.00[EUR][1000 genomes]
rs73368776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73368780	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370603	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370694	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73372634	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372656	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372660	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372663	1.00[AMR][1000 genomes]
rs73372680	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372689	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[EUR][1000 genomes]
rs73374610	1.00[AMR][1000 genomes]
rs73374614	1.00[AMR][1000 genomes]
rs73374623	1.00[AMR][1000 genomes]
rs73374634	1.00[AMR][1000 genomes]
rs73374677	1.00[AMR][1000 genomes]
rs73374685	1.00[AMR][1000 genomes]
rs7899872	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907892	1.00[EUR][1000 genomes]
rs7910281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]
rs7917766	1.00[AMR][1000 genomes]
rs7921864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116637000-116642200	Weak transcription	HMEC	breast
2	chr10:116639000-116642000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:116639000-116643000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:116639200-116642200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:116639200-116642800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:116639400-116642000	Enhancers	Fetal Kidney	kidney
7	chr10:116639400-116642000	Enhancers	Fetal Muscle Trunk	muscle
8	chr10:116639400-116642200	Enhancers	Fetal Stomach	stomach
9	chr10:116639600-116642000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:116639600-116642000	Enhancers	Fetal Intestine Large	intestine
11	chr10:116639600-116642200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:116639600-116642200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:116639600-116642400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:116639800-116642000	Enhancers	Fetal Lung	lung
15	chr10:116639800-116642200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:116639800-116642200	Enhancers	Placenta	Placenta
17	chr10:116639800-116642200	Enhancers	Ovary	ovary
18	chr10:116639800-116642200	Weak transcription	Osteobl	bone
19	chr10:116639800-116642600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:116639800-116642600	Weak transcription	A549	lung
21	chr10:116640000-116642000	Weak transcription	Hela-S3	cervix
22	chr10:116640400-116642200	Enhancers	Rectal Smooth Muscle	rectum
23	chr10:116640400-116642800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:116640600-116642000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr10:116641000-116642200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:116641000-116642200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:116641200-116642200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:116641200-116643000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:116641400-116642000	Flanking Active TSS	Colon Smooth Muscle	Colon
30	chr10:116641400-116642200	Enhancers	H9 Cell Line	embryonic stem cell
31	chr10:116641400-116642200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:116641600-116642000	Enhancers	Spleen	Spleen
33	chr10:116641600-116643000	Enhancers	Aorta	Aorta
34	chr10:116641600-116643000	Enhancers	NHEK	skin
35	chr10:116641600-116645400	Weak transcription	Stomach Mucosa	stomach
36	chr10:116641800-116642400	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr10:116641800-116642400	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr10:116641800-116642400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:116641800-116643000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:116641800-116643000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:116641800-116643000	Enhancers	NH-A	brain

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