Variant report

Variant	rs73374610
Chromosome Location	chr10:116754603-116754604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRUB1-1	chr10:116754301-116754688	NONHSAT016471

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs57196389	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59919921	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61479736	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7072302	1.00[AMR][1000 genomes]
rs7091595	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7100519	1.00[AMR][1000 genomes]
rs7100802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367389	1.00[AMR][1000 genomes]
rs73368776	1.00[AMR][1000 genomes]
rs73368780	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370603	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370613	1.00[AMR][1000 genomes]
rs73370694	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372656	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372660	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372663	1.00[AMR][1000 genomes]
rs73372680	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73372689	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374614	1.00[AMR][1000 genomes]
rs73374623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374677	1.00[AMR][1000 genomes]
rs73374685	1.00[AMR][1000 genomes]
rs7899872	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910281	1.00[AMR][1000 genomes]
rs7917766	1.00[AMR][1000 genomes]
rs7921864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1039002	chr10:116643095-116879483	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv2761634	chr10:116643095-116879495	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1045654	chr10:116654574-116879483	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1043242	chr10:116655057-116883386	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv831997	chr10:116689552-116855698	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116698800-116763600	Weak transcription	Esophagus	oesophagus
2	chr10:116723000-116760800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:116731000-116761200	Weak transcription	Pancreas	Pancrea
4	chr10:116737400-116759800	Weak transcription	Hela-S3	cervix
5	chr10:116742200-116761600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:116742600-116763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:116742600-116763400	Weak transcription	Lung	lung
8	chr10:116744200-116756400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr10:116744200-116758600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:116744400-116756800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:116744600-116755000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:116744600-116756600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:116744600-116756800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr10:116744800-116755400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:116745000-116755200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:116745000-116755400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:116745000-116759200	Weak transcription	Left Ventricle	heart
18	chr10:116745000-116761200	Weak transcription	Adipose Nuclei	Adipose
19	chr10:116745600-116760400	Weak transcription	Liver	Liver
20	chr10:116745800-116755200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:116745800-116761800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:116746000-116760800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:116746000-116761000	Weak transcription	Primary B cells from cord blood	blood
24	chr10:116746800-116757800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:116746800-116761000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:116747200-116761200	Weak transcription	Dnd41	blood
27	chr10:116747800-116760400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:116748200-116761000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:116748400-116761000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:116748400-116761000	Weak transcription	Aorta	Aorta
31	chr10:116748400-116761200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:116748600-116755200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:116748600-116755200	Weak transcription	HSMMtube	muscle
34	chr10:116748600-116755200	Weak transcription	NHLF	lung
35	chr10:116749000-116761200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:116750400-116760800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:116751000-116757200	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:116751200-116755400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:116751400-116755200	Weak transcription	Brain Germinal Matrix	brain
40	chr10:116752200-116760800	Weak transcription	Brain Angular Gyrus	brain
41	chr10:116752400-116756800	Weak transcription	Ovary	ovary
42	chr10:116752800-116761400	Weak transcription	Placenta	Placenta
43	chr10:116752800-116763600	Weak transcription	Spleen	Spleen
44	chr10:116754200-116756000	Enhancers	Fetal Brain Male	brain
45	chr10:116754400-116755200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:116754400-116755200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:116754400-116755600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:116754400-116756000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:116754400-116761400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links