Variant report

Variant	rs73357618
Chromosome Location	chr10:116527635-116527636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116526447..116528712-chr10:116580718..116582885,3	MCF-7	breast:
2	chr10:116510537..116513350-chr10:116526093..116528633,2	MCF-7	breast:
3	chr10:116469822..116472730-chr10:116527178..116529089,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1116508	1.00[EUR][1000 genomes]
rs11812214	1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs56859887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	1.00[EUR][1000 genomes]
rs57627999	1.00[EUR][1000 genomes]
rs57955640	1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs59660416	1.00[EUR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60690229	1.00[EUR][1000 genomes]
rs60738938	1.00[EUR][1000 genomes]
rs60805990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7087895	1.00[EUR][1000 genomes]
rs7093074	1.00[EUR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7095508	1.00[EUR][1000 genomes]
rs7095664	1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7100519	1.00[EUR][1000 genomes]
rs7101145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357630	1.00[EUR][1000 genomes]
rs73361960	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73361981	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73361987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73362835	1.00[EUR][1000 genomes]
rs73362837	1.00[EUR][1000 genomes]
rs73362841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363907	1.00[EUR][1000 genomes]
rs73363913	1.00[EUR][1000 genomes]
rs73363916	1.00[EUR][1000 genomes]
rs73367377	1.00[EUR][1000 genomes]
rs73367389	1.00[EUR][1000 genomes]
rs73368776	1.00[EUR][1000 genomes]
rs73370603	1.00[EUR][1000 genomes]
rs73370613	1.00[EUR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74158019	1.00[EUR][1000 genomes]
rs7899192	1.00[EUR][1000 genomes]
rs7899872	1.00[EUR][1000 genomes]
rs7907892	1.00[EUR][1000 genomes]
rs7910281	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]
rs7921864	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116525600-116528400	Active TSS	Right Atrium	heart
2	chr10:116526200-116528200	Active TSS	Fetal Intestine Small	intestine
3	chr10:116526200-116528600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:116526200-116528600	Active TSS	Right Ventricle	heart
5	chr10:116526400-116527800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:116526600-116528200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
7	chr10:116526600-116528400	Active TSS	Left Ventricle	heart
8	chr10:116526600-116528600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr10:116526600-116528800	Bivalent/Poised TSS	Fetal Brain Female	brain
10	chr10:116526800-116528400	Active TSS	Aorta	Aorta
11	chr10:116526800-116528400	Active TSS	Brain Angular Gyrus	brain
12	chr10:116526800-116528400	Active TSS	Brain Anterior Caudate	brain
13	chr10:116526800-116528600	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr10:116526800-116528600	Active TSS	Rectal Smooth Muscle	rectum
15	chr10:116526800-116528800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr10:116527000-116527800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr10:116527000-116527800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
18	chr10:116527000-116527800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
19	chr10:116527000-116528000	Flanking Bivalent TSS/Enh	Thymus	Thymus
20	chr10:116527000-116528200	Active TSS	H1 Cell Line	embryonic stem cell
21	chr10:116527000-116528400	Active TSS	Ovary	ovary
22	chr10:116527000-116528600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr10:116527000-116528600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:116527000-116528600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr10:116527200-116527800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr10:116527200-116527800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
27	chr10:116527200-116527800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
28	chr10:116527200-116527800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
29	chr10:116527200-116527800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
30	chr10:116527200-116527800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
31	chr10:116527200-116528000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:116527200-116528000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
33	chr10:116527200-116528200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:116527200-116528200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:116527200-116528200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:116527200-116528200	Active TSS	HSMM	muscle
37	chr10:116527200-116528200	Active TSS	NHDF-Ad	bronchial
38	chr10:116527200-116528400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:116527200-116528400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:116527200-116528400	Active TSS	HSMMtube	muscle
41	chr10:116527200-116528400	Bivalent/Poised TSS	NHLF	lung
42	chr10:116527200-116528600	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr10:116527200-116528600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr10:116527200-116528600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:116527200-116528600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:116527200-116528800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
47	chr10:116527400-116527800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:116527400-116527800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
49	chr10:116527400-116527800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr10:116527400-116527800	Flanking Active TSS	Lung	lung

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