Variant report

Variant	rs73362837
Chromosome Location	chr10:116365647-116365648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1116508	1.00[EUR][1000 genomes]
rs11812214	1.00[EUR][1000 genomes]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs56844582	1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs57551865	1.00[EUR][1000 genomes]
rs57627999	1.00[EUR][1000 genomes]
rs57955640	1.00[EUR][1000 genomes]
rs58043949	1.00[EUR][1000 genomes]
rs58167147	1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs59660416	1.00[EUR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60738938	1.00[EUR][1000 genomes]
rs60805990	1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[EUR][1000 genomes]
rs7087895	1.00[EUR][1000 genomes]
rs7093074	1.00[EUR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7095508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7095664	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7101145	1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	1.00[EUR][1000 genomes]
rs73357618	1.00[EUR][1000 genomes]
rs73357630	1.00[EUR][1000 genomes]
rs73361960	1.00[EUR][1000 genomes]
rs73361970	1.00[EUR][1000 genomes]
rs73361981	1.00[EUR][1000 genomes]
rs73362028	1.00[EUR][1000 genomes]
rs73362046	1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73362835	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73362841	1.00[EUR][1000 genomes]
rs73362848	1.00[EUR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[EUR][1000 genomes]
rs74158019	1.00[EUR][1000 genomes]
rs7899192	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907892	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116345000-116382400	Weak transcription	HSMM	muscle
2	chr10:116352600-116367600	Weak transcription	Ovary	ovary
3	chr10:116354800-116378600	Weak transcription	Fetal Stomach	stomach
4	chr10:116355400-116371000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:116359200-116366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:116360600-116370600	Weak transcription	Lung	lung
7	chr10:116360600-116380600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:116361400-116379000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:116361600-116378200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:116362400-116366000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:116362600-116365800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:116362600-116367600	Enhancers	Stomach Mucosa	stomach
13	chr10:116362800-116365800	Enhancers	Brain Anterior Caudate	brain
14	chr10:116362800-116365800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr10:116363000-116366000	Enhancers	HepG2	liver
16	chr10:116363600-116366000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr10:116363800-116365800	Enhancers	Hela-S3	cervix
18	chr10:116364000-116365800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr10:116364000-116366600	Enhancers	Fetal Kidney	kidney
20	chr10:116364000-116368200	Enhancers	Adipose Nuclei	Adipose
21	chr10:116364200-116365800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:116364200-116366600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:116364200-116367200	Enhancers	Left Ventricle	heart
24	chr10:116364400-116365800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr10:116364400-116365800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:116364400-116365800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:116364400-116365800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr10:116364600-116365800	Enhancers	Gastric	stomach
29	chr10:116364600-116365800	Flanking Active TSS	A549	lung
30	chr10:116364600-116366800	Enhancers	Right Atrium	heart
31	chr10:116364600-116367000	Enhancers	Liver	Liver
32	chr10:116364600-116367200	Enhancers	Right Ventricle	heart
33	chr10:116364800-116365800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr10:116364800-116366000	Enhancers	HMEC	breast
35	chr10:116365000-116365800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:116365000-116367200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:116365000-116367200	Weak transcription	HUVEC	blood vessel
38	chr10:116365000-116367600	Enhancers	Fetal Heart	heart
39	chr10:116365000-116371400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:116365000-116372400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:116365000-116382400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:116365200-116365800	Enhancers	Fetal Intestine Large	intestine
43	chr10:116365200-116367600	Enhancers	Pancreas	Pancrea
44	chr10:116365200-116371600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:116365200-116371800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:116365200-116373600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr10:116365400-116366200	Weak transcription	Psoas Muscle	Psoas
48	chr10:116365400-116366400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:116365400-116369800	Weak transcription	Brain Angular Gyrus	brain
50	chr10:116365400-116372400	Weak transcription	Small Intestine	intestine

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