Variant report

Variant	rs74158019
Chromosome Location	chr10:116335648-116335649
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:116335433-116337767	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr10:116335625-116336220	MCF10A-Er-Src	breast:	n/a	chr10:116335855-116335866 chr10:116335751-116335759
3	FOS	chr10:116335571-116336279	MCF10A-Er-Src	breast:	n/a	n/a
4	MYC	chr10:116335557-116336226	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr10:116335621-116336101	MCF10A-Er-Src	breast:	n/a	chr10:116335855-116335866 chr10:116335751-116335759
6	STAT3	chr10:116335598-116336255	MCF10A-Er-Src	breast:	n/a	chr10:116335855-116335866 chr10:116335751-116335759
7	FOS	chr10:116335568-116336222	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr10:116335495-116336265	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116335323..116336834-chr10:116340882..116343052,2	K562	blood:

Variant related genes	Relation type
ABLIM1	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs17092411	1.00[EUR][1000 genomes]
rs2146804	1.00[EUR][1000 genomes]
rs2497694	1.00[EUR][1000 genomes]
rs57025690	1.00[EUR][1000 genomes]
rs57201267	1.00[EUR][1000 genomes]
rs58206173	1.00[EUR][1000 genomes]
rs58366976	1.00[EUR][1000 genomes]
rs60092663	1.00[EUR][1000 genomes]
rs60163199	1.00[EUR][1000 genomes]
rs60266547	1.00[EUR][1000 genomes]
rs60297453	1.00[EUR][1000 genomes]
rs60410790	1.00[EUR][1000 genomes]
rs60805990	1.00[EUR][1000 genomes]
rs61207042	1.00[EUR][1000 genomes]
rs6585291	1.00[EUR][1000 genomes]
rs6585292	1.00[EUR][1000 genomes]
rs7073481	1.00[EUR][1000 genomes]
rs7093923	1.00[EUR][1000 genomes]
rs7095508	1.00[EUR][1000 genomes]
rs7095664	1.00[EUR][1000 genomes]
rs7097805	1.00[EUR][1000 genomes]
rs7101145	1.00[EUR][1000 genomes]
rs73357605	1.00[EUR][1000 genomes]
rs73357608	1.00[EUR][1000 genomes]
rs73357614	1.00[EUR][1000 genomes]
rs73357618	1.00[EUR][1000 genomes]
rs73362028	1.00[EUR][1000 genomes]
rs73362046	1.00[EUR][1000 genomes]
rs73362055	1.00[EUR][1000 genomes]
rs73362058	1.00[EUR][1000 genomes]
rs73362061	1.00[EUR][1000 genomes]
rs73362073	1.00[EUR][1000 genomes]
rs73362074	1.00[EUR][1000 genomes]
rs73362835	1.00[EUR][1000 genomes]
rs73362837	1.00[EUR][1000 genomes]
rs73362841	1.00[EUR][1000 genomes]
rs73362848	1.00[EUR][1000 genomes]
rs73371868	1.00[EUR][1000 genomes]
rs73371874	1.00[EUR][1000 genomes]
rs73371876	1.00[EUR][1000 genomes]
rs73371880	1.00[EUR][1000 genomes]
rs73371883	1.00[EUR][1000 genomes]
rs73371890	1.00[EUR][1000 genomes]
rs73371894	1.00[EUR][1000 genomes]
rs73373705	1.00[EUR][1000 genomes]
rs73373708	1.00[EUR][1000 genomes]
rs73373750	1.00[EUR][1000 genomes]
rs73373754	1.00[EUR][1000 genomes]
rs73373756	1.00[EUR][1000 genomes]
rs73373760	1.00[EUR][1000 genomes]
rs7899192	1.00[EUR][1000 genomes]
rs7916231	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116311600-116336600	Weak transcription	Colonic Mucosa	Colon
2	chr10:116318000-116337200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:116318400-116336600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:116321400-116336600	Weak transcription	Fetal Lung	lung
5	chr10:116323000-116336000	Weak transcription	Lung	lung
6	chr10:116323400-116352000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:116323800-116352000	Weak transcription	Fetal Intestine Large	intestine
8	chr10:116324200-116337400	Weak transcription	Fetal Stomach	stomach
9	chr10:116325600-116336000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:116330400-116336000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:116331000-116339000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:116331400-116336000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:116331400-116336000	Weak transcription	Ovary	ovary
14	chr10:116331600-116335800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:116331800-116336000	Weak transcription	NH-A	brain
16	chr10:116332200-116337000	Weak transcription	A549	lung
17	chr10:116333600-116336600	Weak transcription	Brain Substantia Nigra	brain
18	chr10:116333600-116345000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:116334600-116335800	Enhancers	Esophagus	oesophagus
20	chr10:116334600-116337200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:116334800-116336600	Weak transcription	HUVEC	blood vessel
22	chr10:116335000-116335800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr10:116335200-116335800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:116335200-116336000	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:116335200-116336800	Enhancers	Pancreas	Pancrea
26	chr10:116335200-116336800	Enhancers	Psoas Muscle	Psoas
27	chr10:116335200-116337000	Enhancers	Brain Angular Gyrus	brain
28	chr10:116335200-116337000	Enhancers	Fetal Heart	heart
29	chr10:116335200-116337200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:116335200-116337600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:116335200-116337600	Enhancers	HMEC	breast
32	chr10:116335200-116337800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:116335200-116337800	Enhancers	Adipose Nuclei	Adipose
34	chr10:116335200-116338000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:116335200-116338000	Enhancers	HSMM	muscle
36	chr10:116335200-116338200	Enhancers	Right Atrium	heart
37	chr10:116335400-116336600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:116335400-116336600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:116335400-116336800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:116335400-116336800	Enhancers	Stomach Smooth Muscle	stomach
41	chr10:116335400-116337000	Enhancers	Aorta	Aorta
42	chr10:116335400-116337200	Enhancers	NHEK	skin
43	chr10:116335400-116337400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:116335400-116337400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr10:116335400-116337800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:116335400-116337800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:116335400-116337800	Enhancers	Liver	Liver
48	chr10:116335400-116337800	Enhancers	Brain Hippocampus Middle	brain
49	chr10:116335400-116338000	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr10:116335400-116351600	Weak transcription	Fetal Intestine Small	intestine

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