Variant report

Variant	rs73369694
Chromosome Location	chr6:15107498-15107499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:49)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:49 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HMGN3	chr6:15107226-15107651	K562	blood:	n/a	chr6:15107366-15107373
2	RCOR1	chr6:15106593-15107814	K562	blood:	n/a	n/a
3	CEBPB	chr6:15107164-15107551	K562	blood:	n/a	n/a
4	GATA1	chr6:15107181-15107625	PBDEFetal	blood:	n/a	chr6:15107298-15107307
5	CUX1	chr6:15107194-15107573	K562	blood:	n/a	n/a
6	CCNT2	chr6:15107227-15107846	K562	blood:	n/a	chr6:15107707-15107716
7	EP300	chr6:15106637-15108016	K562	blood:	n/a	n/a
8	MYC	chr6:15107259-15107925	K562	blood:	n/a	n/a
9	USF1	chr6:15107214-15107809	K562	blood:	n/a	n/a
10	BHLHE40	chr6:15106719-15107788	K562	blood:	n/a	n/a
11	GATA2	chr6:15107196-15107645	K562	blood:	n/a	chr6:15107298-15107307
12	CEBPD	chr6:15107041-15107668	K562	blood:	n/a	n/a
13	TEAD4	chr6:15106558-15107947	K562	blood:	n/a	n/a
14	POLR2A	chr6:15107207-15109243	SK-N-MC	brain:	n/a	n/a
15	POLR2A	chr6:15107426-15107897	K562	blood:	n/a	n/a
16	UBTF	chr6:15107467-15107610	K562	blood:	n/a	n/a
17	MAX	chr6:15107293-15107623	K562	blood:	n/a	n/a
18	GABPA	chr6:15107242-15107546	K562	blood:	n/a	n/a
19	ZMIZ1	chr6:15107187-15107679	K562	blood:	n/a	n/a
20	NR2F2	chr6:15107061-15108277	K562	blood:	n/a	n/a
21	GATA2	chr6:15107072-15107683	K562	blood:	n/a	chr6:15107298-15107307
22	MAX	chr6:15107191-15107843	K562	blood:	n/a	n/a
23	ZNF384	chr6:15107224-15107740	K562	blood:	n/a	n/a
24	TBP	chr6:15107248-15107772	K562	blood:	n/a	n/a
25	STAT5A	chr6:15107100-15107548	K562	blood:	n/a	chr6:15107273-15107285
26	RCOR1	chr6:15107195-15107821	K562	blood:	n/a	n/a
27	TAL1	chr6:15106616-15107893	K562	blood:	n/a	chr6:15106807-15106825
28	CBX3	chr6:15106008-15107878	K562	blood:	n/a	n/a
29	ZBTB7A	chr6:15107406-15107619	K562	blood:	n/a	n/a
30	POLR2A	chr6:15107180-15107524	K562	blood:	n/a	n/a
31	MAFK	chr6:15107266-15107893	K562	blood:	n/a	n/a
32	NR2F2	chr6:15107135-15107695	K562	blood:	n/a	n/a
33	MAZ	chr6:15107252-15107867	K562	blood:	n/a	n/a
34	TBL1XR1	chr6:15106863-15107648	K562	blood:	n/a	n/a
35	EP300	chr6:15107123-15107570	K562	blood:	n/a	n/a
36	TBL1XR1	chr6:15106764-15107582	K562	blood:	n/a	n/a
37	UBTF	chr6:15107332-15107869	K562	blood:	n/a	n/a
38	GATA1	chr6:15106470-15108923	K562	blood:	n/a	chr6:15108734-15108745 chr6:15106808-15106825 chr6:15107298-15107307
39	CEBPD	chr6:15106593-15107904	K562	blood:	n/a	n/a
40	POLR2A	chr6:15107145-15107728	K562	blood:	n/a	n/a
41	PML	chr6:15107074-15107682	K562	blood:	n/a	n/a
42	JUND	chr6:15107208-15107828	K562	blood:	n/a	chr6:15107671-15107682
43	GATA2	chr6:15106745-15107756	K562	blood:	n/a	chr6:15106808-15106825 chr6:15107298-15107307
44	MYC	chr6:15106701-15107806	K562	blood:	n/a	n/a
45	TEAD4	chr6:15106597-15107576	K562	blood:	n/a	n/a
46	GATA1	chr6:15106602-15108186	PBDE	blood:	n/a	chr6:15106808-15106825 chr6:15107298-15107307
47	MAX	chr6:15106742-15107830	K562	blood:	n/a	n/a
48	STAT5A	chr6:15107085-15107559	K562	blood:	n/a	chr6:15107273-15107285
49	ARID3A	chr6:15106725-15107548	K562	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15103632..15105300-chr6:15106507..15108224,2	K562	blood:
2	chr6:14882855..14884940-chr6:15106180..15108933,2	K562	blood:
3	chr6:14778863..14781243-chr6:15107030..15109161,2	K562	blood:
4	chr6:15106427..15109667-chr6:15111584..15114479,3	K562	blood:
5	chr6:15106242..15108900-chr6:15209959..15212920,4	K562	blood:
6	chr6:15069920..15071454-chr6:15106788..15108446,2	K562	blood:
7	chr6:15069954..15071516-chr6:15106946..15109346,2	K562	blood:
8	chr6:15092731..15095339-chr6:15106274..15108820,2	K562	blood:
9	chr6:15099407..15102397-chr6:15106486..15108344,2	K562	blood:
10	chr6:15102630..15105132-chr6:15106724..15108823,2	K562	blood:
11	chr6:15093162..15095883-chr6:15107253..15109539,2	MCF-7	breast:
12	chr6:15106983..15108831-chr6:15151531..15154353,2	K562	blood:
13	chr6:15105604..15108959-chr6:15245974..15248979,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000216754	TF binding region
ENSG00000216754	Chromatin interaction
ENSG00000242989	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73361557	1.00[AMR][1000 genomes]
rs73371636	1.00[AMR][1000 genomes]
rs73371638	1.00[AMR][1000 genomes]
rs73373433	1.00[AMR][1000 genomes]
rs7754276	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15090400-15109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15106800-15108000	Flanking Active TSS	K562	blood
4	chr6:15107000-15107800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:15107400-15108200	Enhancers	Fetal Stomach	stomach
6	chr6:15107400-15109200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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