Variant report

Variant	rs73361557
Chromosome Location	chr6:15309781-15309782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15305494..15307025-chr6:15307899..15310326,2	K562	blood:
2	chr6:15211374..15212897-chr6:15307612..15309960,2	K562	blood:
3	chr6:15300692..15302915-chr6:15309585..15311589,2	MCF-7	breast:
4	chr6:15309030..15310974-chr6:15337189..15339265,2	K562	blood:
5	chr6:15303140..15305494-chr6:15308085..15310163,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60258532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60568619	1.00[AMR][1000 genomes]
rs73361583	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363151	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363167	1.00[AMR][1000 genomes]
rs73363174	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363180	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369694	1.00[AMR][1000 genomes]
rs73371636	1.00[AMR][1000 genomes]
rs73371638	1.00[AMR][1000 genomes]
rs73373433	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15295800-15311400	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:15300200-15312400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15300400-15312600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:15300800-15310600	Weak transcription	HSMM	muscle
5	chr6:15301200-15312400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:15301200-15313000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:15301200-15313400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:15302600-15309800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:15303400-15311400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:15303400-15311400	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:15303800-15310600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:15303800-15312600	Weak transcription	Lung	lung
13	chr6:15304800-15309800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:15305200-15311000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:15305200-15313600	Weak transcription	Liver	Liver
16	chr6:15305400-15312600	Weak transcription	Fetal Brain Male	brain
17	chr6:15305600-15310600	Weak transcription	Gastric	stomach
18	chr6:15305600-15312600	Weak transcription	Fetal Brain Female	brain
19	chr6:15305800-15310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:15305800-15310000	Weak transcription	Pancreas	Pancrea
21	chr6:15305800-15310600	Weak transcription	Esophagus	oesophagus
22	chr6:15306000-15310200	Weak transcription	Right Atrium	heart
23	chr6:15306000-15311800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr6:15306000-15318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:15306200-15310000	Weak transcription	Stomach Mucosa	stomach
26	chr6:15306400-15310000	Weak transcription	Fetal Intestine Large	intestine
27	chr6:15306400-15310600	Weak transcription	Fetal Heart	heart
28	chr6:15306400-15312600	Weak transcription	Spleen	Spleen
29	chr6:15306600-15310000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:15306600-15312400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:15306600-15313000	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:15307000-15309800	Weak transcription	Fetal Intestine Small	intestine
33	chr6:15307000-15310000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:15307000-15314800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:15307400-15310200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr6:15307400-15310200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:15307400-15311000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:15307400-15311000	Enhancers	Brain Anterior Caudate	brain
39	chr6:15307400-15314400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr6:15307600-15309800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:15307600-15310400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:15307600-15310600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:15307600-15310600	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr6:15307600-15311000	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr6:15307600-15311200	Enhancers	Brain Cingulate Gyrus	brain
46	chr6:15307600-15311400	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr6:15307600-15311600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:15307600-15314000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:15307800-15310000	Weak transcription	Right Ventricle	heart
50	chr6:15307800-15310200	Weak transcription	Left Ventricle	heart

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