Variant report

Variant	rs73367323
Chromosome Location	chr6:15489876-15489877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15474184..15476635-chr6:15488076..15490844,2	K562	blood:
2	chr6:15483229..15486068-chr6:15489614..15491902,2	MCF-7	breast:
3	chr6:15489579..15491671-chr6:15507006..15508555,2	MCF-7	breast:
4	chr6:15243868..15248249-chr6:15486712..15491085,4	K562	blood:
5	chr6:15478158..15480159-chr6:15489862..15492490,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60258532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60568619	1.00[AMR][1000 genomes]
rs73361557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361583	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363151	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363167	1.00[AMR][1000 genomes]
rs73363174	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363180	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15461600-15491000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:15471000-15502000	Weak transcription	A549	lung
3	chr6:15480400-15490600	Weak transcription	NHDF-Ad	bronchial
4	chr6:15481200-15491800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:15482200-15491400	Weak transcription	Fetal Brain Male	brain
6	chr6:15482400-15491400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:15483200-15490800	Weak transcription	HSMMtube	muscle
8	chr6:15483200-15491400	Weak transcription	Fetal Heart	heart
9	chr6:15484800-15496400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:15486200-15491000	Strong transcription	Primary B cells from cord blood	blood
11	chr6:15486200-15491400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:15486400-15490200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:15486400-15491600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:15486600-15490000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:15486600-15490000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:15486600-15490200	Strong transcription	Dnd41	blood
17	chr6:15486600-15491400	Weak transcription	Right Atrium	heart
18	chr6:15486800-15490000	Strong transcription	K562	blood
19	chr6:15486800-15490800	Weak transcription	Psoas Muscle	Psoas
20	chr6:15486800-15502000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:15487000-15490000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:15487000-15490400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr6:15487000-15490600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:15487000-15490800	Strong transcription	Fetal Stomach	stomach
25	chr6:15487200-15490200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:15487200-15490200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:15487200-15490200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:15487200-15490200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:15487200-15490200	Strong transcription	Brain Anterior Caudate	brain
30	chr6:15487200-15490400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:15487200-15491000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr6:15487200-15508000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:15487400-15490000	Strong transcription	Adipose Nuclei	Adipose
34	chr6:15487400-15490000	Strong transcription	Brain Cingulate Gyrus	brain
35	chr6:15487400-15490000	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr6:15487400-15490200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:15487400-15490200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:15487400-15490200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:15487400-15490200	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:15487400-15490200	Strong transcription	Esophagus	oesophagus
41	chr6:15487400-15490200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:15487400-15490200	Strong transcription	Gastric	stomach
43	chr6:15487400-15490200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr6:15487400-15490800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:15487600-15490000	Strong transcription	Liver	Liver
46	chr6:15487600-15490000	Strong transcription	Brain Hippocampus Middle	brain
47	chr6:15487600-15490000	Strong transcription	Ovary	ovary
48	chr6:15487600-15490000	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:15487600-15490000	Strong transcription	HepG2	liver
50	chr6:15487600-15490200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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