Variant report

Variant	rs60258532
Chromosome Location	chr6:15350857-15350858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15340578..15343922-chr6:15348379..15351568,3	K562	blood:
2	chr6:15339473..15343526-chr6:15347239..15351934,4	K562	blood:
3	chr6:15350348..15351999-chr6:15369721..15371306,2	MCF-7	breast:
4	chr6:15350037..15352732-chr6:15370116..15373857,3	K562	blood:
5	chr6:15350514..15352108-chr6:15353885..15356215,2	MCF-7	breast:
6	chr6:15350544..15352569-chr6:15377945..15380141,2	MCF-7	breast:
7	chr6:15349809..15351632-chr6:15365536..15368213,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60568619	1.00[AMR][1000 genomes]
rs73361557	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363167	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367323	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369516	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373433	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538144	chr6:15310696-15364984	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15327800-15375800	Weak transcription	Aorta	Aorta
2	chr6:15332000-15355800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:15332000-15359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:15333200-15351400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:15338000-15351600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:15338400-15351600	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:15338800-15351600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:15339400-15351600	Weak transcription	Right Atrium	heart
9	chr6:15341000-15362800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:15341200-15359400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:15341400-15365400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:15341600-15352200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:15341800-15351600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:15341800-15352600	Weak transcription	Pancreas	Pancrea
15	chr6:15341800-15362800	Weak transcription	Gastric	stomach
16	chr6:15341800-15378400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:15342000-15351200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:15342000-15351800	Weak transcription	HSMM	muscle
19	chr6:15342000-15352800	Weak transcription	Fetal Kidney	kidney
20	chr6:15342600-15351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:15342600-15351600	Weak transcription	Esophagus	oesophagus
22	chr6:15342600-15352000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:15342600-15352600	Weak transcription	Stomach Mucosa	stomach
24	chr6:15342800-15351400	Weak transcription	Brain Angular Gyrus	brain
25	chr6:15342800-15351600	Weak transcription	Brain Substantia Nigra	brain
26	chr6:15342800-15351600	Weak transcription	Lung	lung
27	chr6:15342800-15352000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:15342800-15364600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:15343400-15353400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:15344200-15351200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:15344200-15351600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:15344200-15351600	Weak transcription	Psoas Muscle	Psoas
33	chr6:15344400-15351400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:15344400-15351600	Weak transcription	Left Ventricle	heart
35	chr6:15344600-15351600	Weak transcription	Brain Anterior Caudate	brain
36	chr6:15344800-15351800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr6:15345400-15351400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:15345400-15351600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:15345400-15351800	Weak transcription	Fetal Stomach	stomach
40	chr6:15345600-15352800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:15345600-15357400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:15346200-15351400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:15346200-15351600	Weak transcription	Ovary	ovary
44	chr6:15346200-15351800	Weak transcription	K562	blood
45	chr6:15347000-15352000	Weak transcription	Brain Germinal Matrix	brain
46	chr6:15347000-15355400	Enhancers	Primary T cells from cord blood	blood
47	chr6:15347200-15351600	Weak transcription	Small Intestine	intestine
48	chr6:15347600-15352800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:15347800-15351400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:15348000-15351400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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