Variant report

Variant	rs73370777
Chromosome Location	chr21:17682492-17682493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7280831	1.00[AMR][1000 genomes]
rs73370780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
4	esv2830061	chr21:17667720-17693951	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17675600-17691600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr21:17676600-17683400	Active TSS	Brain Germinal Matrix	brain
3	chr21:17678400-17687600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr21:17678400-17691400	Weak transcription	Esophagus	oesophagus
5	chr21:17679400-17682800	Active TSS	Brain Anterior Caudate	brain
6	chr21:17679600-17682600	Active TSS	Brain Angular Gyrus	brain
7	chr21:17679600-17682800	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr21:17679600-17683000	Active TSS	Brain Hippocampus Middle	brain
9	chr21:17679600-17683000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr21:17679600-17683000	Active TSS	Brain Substantia Nigra	brain
11	chr21:17680200-17683000	Active TSS	Brain Cingulate Gyrus	brain
12	chr21:17680800-17683400	Weak transcription	Hela-S3	cervix
13	chr21:17681600-17682600	Enhancers	Primary T cells from cord blood	blood
14	chr21:17681800-17682600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr21:17682000-17682600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr21:17682000-17683000	Flanking Active TSS	Dnd41	blood
17	chr21:17682200-17682600	Active TSS	Fetal Brain Female	brain
18	chr21:17682200-17682600	Active TSS	Ovary	ovary
19	chr21:17682200-17682600	Enhancers	HSMMtube	muscle
20	chr21:17682200-17682600	Enhancers	NH-A	brain
21	chr21:17682200-17682800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr21:17682200-17682800	Enhancers	Liver	Liver
23	chr21:17682200-17683800	Weak transcription	HSMM	muscle
24	chr21:17682400-17682600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr21:17682400-17682600	Active TSS	Fetal Brain Male	brain
26	chr21:17682400-17683600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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