Variant report

Variant	rs73370780
Chromosome Location	chr21:17684365-17684366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7280831	1.00[AMR][1000 genomes]
rs73370777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
4	esv2830061	chr21:17667720-17693951	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17675600-17691600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr21:17678400-17687600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr21:17678400-17691400	Weak transcription	Esophagus	oesophagus
4	chr21:17682600-17688800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr21:17682800-17684800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr21:17682800-17685000	Weak transcription	Ovary	ovary
7	chr21:17682800-17693400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr21:17682800-17693800	Weak transcription	Liver	Liver
9	chr21:17683000-17684400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr21:17683000-17687400	Weak transcription	Brain Hippocampus Middle	brain
11	chr21:17683000-17687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr21:17683200-17688000	Weak transcription	Fetal Brain Male	brain
13	chr21:17683600-17684800	Weak transcription	Brain Anterior Caudate	brain
14	chr21:17683600-17685600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr21:17683600-17691200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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