Variant report

Variant	rs7337289
Chromosome Location	chr13:48980971-48980972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs4151562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151582	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151594	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55816660	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55926808	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56948396	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60410511	1.00[AMR][1000 genomes]
rs61257669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7330657	1.00[AMR][1000 genomes]
rs74074903	1.00[AMR][1000 genomes]
rs74074908	1.00[AMR][1000 genomes]
rs74075912	0.92[AFR][1000 genomes]
rs74075996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077619	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077637	1.00[AMR][1000 genomes]
rs74077639	1.00[AMR][1000 genomes]
rs74077645	1.00[AMR][1000 genomes]
rs74077646	1.00[AMR][1000 genomes]
rs7999469	1.00[AMR][1000 genomes]
rs9331982	1.00[AMR][1000 genomes]
rs9331989	1.00[AMR][1000 genomes]
rs9332011	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803998	chr13:48966078-48986320	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1050786	chr13:48971510-48987032	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1053432	chr13:48971510-48992810	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1043486	chr13:48971510-48996995	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48916800-48985400	Weak transcription	Colonic Mucosa	Colon
2	chr13:48934600-48984200	Weak transcription	Right Ventricle	heart
3	chr13:48943600-48984200	Weak transcription	Brain Angular Gyrus	brain
4	chr13:48944600-48983400	Weak transcription	Psoas Muscle	Psoas
5	chr13:48966400-48986000	Weak transcription	Lung	lung
6	chr13:48966800-48984200	Weak transcription	Placenta	Placenta
7	chr13:48968800-48984200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr13:48969000-48984200	Weak transcription	Fetal Intestine Large	intestine
9	chr13:48969000-48984400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:48969200-48984200	Weak transcription	Fetal Stomach	stomach
11	chr13:48969200-48984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:48970600-48984200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:48972600-48982600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr13:48973800-48984000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr13:48974600-48986000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:48975200-48983800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr13:48975200-48984000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr13:48975200-48984200	Weak transcription	Fetal Intestine Small	intestine
19	chr13:48975200-48985400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr13:48975400-48983000	Weak transcription	Brain Hippocampus Middle	brain
21	chr13:48975400-48984200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr13:48975600-48983000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr13:48975600-48984000	Weak transcription	Stomach Mucosa	stomach
24	chr13:48975600-48985200	Weak transcription	NH-A	brain
25	chr13:48975800-48983000	Weak transcription	Fetal Kidney	kidney
26	chr13:48975800-48984000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr13:48976000-48984200	Weak transcription	Primary B cells from cord blood	blood
28	chr13:48976000-48984200	Weak transcription	A549	lung
29	chr13:48976000-48984200	Weak transcription	NHLF	lung
30	chr13:48976000-48984400	Weak transcription	HSMMtube	muscle
31	chr13:48976000-49005800	Weak transcription	Hela-S3	cervix
32	chr13:48976800-48982000	Weak transcription	HepG2	liver
33	chr13:48976800-48983800	Weak transcription	Ovary	ovary
34	chr13:48977000-48984000	Weak transcription	Liver	Liver
35	chr13:48977000-48984000	Weak transcription	HUVEC	blood vessel
36	chr13:48977600-48983000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr13:48977600-48984000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr13:48977600-48984200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr13:48977800-48982600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr13:48977800-48983000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr13:48977800-48983400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr13:48977800-48983800	Weak transcription	HMEC	breast
43	chr13:48977800-48984200	Weak transcription	Fetal Lung	lung
44	chr13:48977800-48984200	Weak transcription	NHDF-Ad	bronchial
45	chr13:48977800-48984400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr13:48977800-48984400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr13:48978000-48984000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr13:48978000-48984200	Weak transcription	Osteobl	bone
49	chr13:48978200-48984000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr13:48978400-48982800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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