Variant report
| Variant | rs73375341 |
|---|---|
| Chromosome Location | chr7:66069879-66069880 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:66068353..66070947-chr7:66081695..66083819,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs57116165 | 1.00[AFR][1000 genomes] |
| rs58437050 | 1.00[AFR][1000 genomes] |
| rs61577818 | 1.00[AFR][1000 genomes] |
| rs73371454 | 1.00[AFR][1000 genomes] |
| rs73375308 | 1.00[AFR][1000 genomes] |
| rs73375312 | 1.00[AFR][1000 genomes] |
| rs73375336 | 1.00[AFR][1000 genomes] |
| rs73375369 | 1.00[AFR][1000 genomes] |
| rs73375386 | 1.00[AFR][1000 genomes] |
| rs73377516 | 1.00[AFR][1000 genomes] |
| rs73377532 | 1.00[AFR][1000 genomes] |
| rs73377576 | 1.00[AFR][1000 genomes] |
| rs73379714 | 1.00[AFR][1000 genomes] |
| rs73379717 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532124 | chr7:65371521-66234730 | Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 125 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026559 | chr7:65617368-66370805 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 116 gene(s) | inside rSNPs | diseases |
| 3 | nsv1035107 | chr7:65814901-66114919 | Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 69 gene(s) | inside rSNPs | diseases |
| 4 | nsv538909 | chr7:65814901-66114919 | Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 69 gene(s) | inside rSNPs | diseases |
| 5 | nsv981511 | chr7:66067376-66075921 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:66068800-66070000 | Enhancers | HepG2 | liver |
