Variant report

Variant	rs73379714
Chromosome Location	chr7:66257524-66257525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:66257389-66257589	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RABGEF1	TF binding region
ENSG00000238841	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57116165	1.00[AFR][1000 genomes]
rs58437050	1.00[AFR][1000 genomes]
rs61229245	1.00[AFR][1000 genomes]
rs73375308	1.00[AFR][1000 genomes]
rs73375312	1.00[AFR][1000 genomes]
rs73375336	1.00[AFR][1000 genomes]
rs73375341	1.00[AFR][1000 genomes]
rs73375369	1.00[AFR][1000 genomes]
rs73375386	1.00[AFR][1000 genomes]
rs73377516	1.00[AFR][1000 genomes]
rs73377532	1.00[AFR][1000 genomes]
rs73377576	1.00[AFR][1000 genomes]
rs73379717	1.00[AFR][1000 genomes]
rs73379759	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv888328	chr7:66173040-66327654	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv888329	chr7:66234585-66376095	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66232600-66279800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:66234800-66275800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:66235200-66261400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:66236000-66259000	Strong transcription	NHDF-Ad	bronchial
5	chr7:66236800-66265200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr7:66236800-66276800	Strong transcription	Dnd41	blood
7	chr7:66236800-66277000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:66236800-66278400	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:66237200-66262400	Weak transcription	Fetal Brain Male	brain
10	chr7:66237200-66277600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:66238200-66276600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:66240400-66260000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:66242200-66260000	Weak transcription	Psoas Muscle	Psoas
14	chr7:66242400-66262600	Weak transcription	Colonic Mucosa	Colon
15	chr7:66243600-66263200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:66245600-66279200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:66245600-66279400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:66245800-66260400	Weak transcription	HUVEC	blood vessel
19	chr7:66246200-66277800	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr7:66246200-66279800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:66246800-66261400	Weak transcription	Esophagus	oesophagus
22	chr7:66247000-66260800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr7:66247600-66261000	Weak transcription	Brain Substantia Nigra	brain
24	chr7:66248400-66277800	Strong transcription	Osteobl	bone
25	chr7:66248600-66276800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:66248800-66277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr7:66249200-66258200	Strong transcription	Placenta	Placenta
28	chr7:66249400-66278600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:66250000-66258000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:66250000-66279200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr7:66250000-66279200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:66250200-66277800	Strong transcription	Primary T cells from cord blood	blood
33	chr7:66250200-66278600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr7:66250400-66258000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr7:66253000-66259600	Weak transcription	K562	blood
36	chr7:66253200-66277600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:66254000-66277400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:66254000-66278400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:66254200-66258600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr7:66254200-66276000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:66254200-66277200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr7:66254200-66278600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:66254400-66258000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:66254400-66259000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr7:66254600-66258000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:66254600-66278600	Strong transcription	HSMM	muscle
47	chr7:66254800-66257800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr7:66254800-66257800	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr7:66254800-66258000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr7:66254800-66258400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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