Variant report

Variant	rs73377385
Chromosome Location	chr7:39632030-39632031
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39629985..39632213-chr7:39633896..39637546,5	K562	blood:
2	chr7:39630501..39633434-chr7:39759020..39762831,5	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56723786	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6462935	0.86[AFR][1000 genomes]
rs6967804	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73377376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7782206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv966713	chr7:39629620-39638513	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39618400-39633000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:39626400-39635800	Enhancers	HUVEC	blood vessel
3	chr7:39627000-39633200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:39629400-39637000	Weak transcription	Stomach Mucosa	stomach
5	chr7:39629600-39632200	Weak transcription	HMEC	breast
6	chr7:39629600-39632400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:39629600-39640400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:39629600-39641800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:39629800-39634600	Weak transcription	Adipose Nuclei	Adipose
10	chr7:39630200-39632400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:39630600-39633200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:39630800-39632400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr7:39631000-39632400	Enhancers	HSMM	muscle
14	chr7:39631200-39632200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:39631200-39632200	Enhancers	NHDF-Ad	bronchial
16	chr7:39631400-39632200	Weak transcription	K562	blood
17	chr7:39631400-39633800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr7:39631400-39634000	Enhancers	HSMMtube	muscle
19	chr7:39631600-39632200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:39631600-39632600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:39631600-39632600	Enhancers	NHLF	lung
22	chr7:39631600-39633000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr7:39631600-39633200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:39631800-39632200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:39631800-39632200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:39631800-39632600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:39631800-39633200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:39632000-39632200	Flanking Active TSS	Osteobl	bone
29	chr7:39632000-39632600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:39632000-39632600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr7:39632000-39632600	Enhancers	GM12878-XiMat	blood
32	chr7:39632000-39632800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:39632000-39632800	Enhancers	NHEK	skin
34	chr7:39632000-39633000	Enhancers	NH-A	brain
35	chr7:39632000-39633200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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