Variant report

Variant	rs7782206
Chromosome Location	chr7:39631507-39631508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39629985..39632213-chr7:39633896..39637546,5	K562	blood:
2	chr7:39630501..39633434-chr7:39759020..39762831,5	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56723786	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6462935	1.00[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs6967804	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73377376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73377385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7777434	1.00[MEX][hapmap]
rs9768664	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv966713	chr7:39629620-39638513	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3476002	chr7:39631171-39632021	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3476003	chr7:39631171-39632021	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39618400-39633000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:39626400-39635800	Enhancers	HUVEC	blood vessel
3	chr7:39627000-39633200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:39629400-39631600	Weak transcription	NHLF	lung
5	chr7:39629400-39637000	Weak transcription	Stomach Mucosa	stomach
6	chr7:39629600-39631600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:39629600-39632000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:39629600-39632200	Weak transcription	HMEC	breast
9	chr7:39629600-39632400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:39629600-39640400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:39629600-39641800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:39629800-39631600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:39629800-39631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:39629800-39632000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:39629800-39632000	Weak transcription	GM12878-XiMat	blood
16	chr7:39629800-39632000	Weak transcription	NH-A	brain
17	chr7:39629800-39632000	Weak transcription	NHEK	skin
18	chr7:39629800-39634600	Weak transcription	Adipose Nuclei	Adipose
19	chr7:39630000-39631800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:39630000-39631800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:39630200-39631800	Weak transcription	Osteobl	bone
22	chr7:39630200-39632000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:39630200-39632400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:39630400-39631600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:39630600-39632000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr7:39630600-39633200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:39630800-39631800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:39630800-39632400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:39631000-39632400	Enhancers	HSMM	muscle
30	chr7:39631200-39631600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr7:39631200-39632200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:39631200-39632200	Enhancers	NHDF-Ad	bronchial
33	chr7:39631400-39632200	Weak transcription	K562	blood
34	chr7:39631400-39633800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr7:39631400-39634000	Enhancers	HSMMtube	muscle

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