Variant report

Variant	rs73378980
Chromosome Location	chr5:166983983-166983984
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs5024074	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58310152	1.00[AMR][1000 genomes]
rs73380909	1.00[AMR][1000 genomes]
rs73380910	1.00[AMR][1000 genomes]
rs73380913	1.00[AMR][1000 genomes]
rs7709731	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166977600-166988400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:166977800-166989000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:166978000-166987400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:166978800-166984000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:166981800-166988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:166983000-166984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:166983200-166988200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:166983800-166984800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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