Variant report

Variant	rs7709731
Chromosome Location	chr5:166978898-166978899
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17068792	1.00[JPT][hapmap]
rs5024074	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896383	1.00[JPT][hapmap]
rs73378980	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166973000-166980000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:166974400-166982000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:166977000-166980600	Weak transcription	Brain Germinal Matrix	brain
4	chr5:166977400-166982200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:166977400-166983400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:166977600-166982400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:166977600-166982400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:166977600-166982600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:166977600-166982600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:166977600-166988400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:166977800-166981400	Weak transcription	Fetal Brain Female	brain
12	chr5:166977800-166981800	Weak transcription	Fetal Brain Male	brain
13	chr5:166977800-166989000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:166978000-166987400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:166978600-166983000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr5:166978800-166979000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:166978800-166981200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:166978800-166983800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:166978800-166984000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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