Variant report

Variant	rs73379000
Chromosome Location	chr10:91412078-91412079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr10:91411772-91412194	GM12878	blood:	n/a	chr10:91412048-91412062 chr10:91412056-91412070
2	MTA3	chr10:91411814-91412396	GM12878	blood:	n/a	n/a
3	RCOR1	chr10:91411909-91412510	GM12878	blood:	n/a	n/a
4	NFIC	chr10:91411803-91412323	GM12878	blood:	n/a	n/a
5	CREB1	chr10:91411734-91412367	GM12878	blood:	n/a	chr10:91411842-91411855
6	NFATC1	chr10:91411815-91412282	GM12878	blood:	n/a	n/a
7	BATF	chr10:91412006-91412329	GM12878	blood:	n/a	n/a
8	NFIC	chr10:91411627-91412540	GM12878	blood:	n/a	n/a
9	SPI1	chr10:91411903-91412201	GM12878	blood:	n/a	n/a
10	TBL1XR1	chr10:91411688-91412266	GM12878	blood:	n/a	n/a
11	TBP	chr10:91411864-91412269	GM12878	blood:	n/a	n/a
12	MTA3	chr10:91411877-91412401	GM12878	blood:	n/a	n/a
13	ATF2	chr10:91411486-91412377	GM12878	blood:	n/a	n/a
14	EBF1	chr10:91411999-91412423	GM12878	blood:	n/a	n/a
15	NFATC1	chr10:91411751-91412415	GM12878	blood:	n/a	n/a
16	SPI1	chr10:91411937-91412189	GM12878	blood:	n/a	n/a
17	EP300	chr10:91411667-91412355	GM12878	blood:	n/a	chr10:91412048-91412062 chr10:91412056-91412070
18	ZNF384	chr10:91411784-91412258	GM12878	blood:	n/a	n/a
19	SPI1	chr10:91411889-91412283	GM12891	blood:	n/a	n/a
20	PML	chr10:91411812-91412416	GM12878	blood:	n/a	n/a
21	CREB1	chr10:91411644-91412432	GM12878	blood:	n/a	chr10:91411842-91411855
22	EBF1	chr10:91412061-91412282	GM12878	blood:	n/a	n/a
23	RUNX3	chr10:91411785-91412376	GM12878	blood:	n/a	n/a
24	CUX1	chr10:91411837-91412166	GM12878	blood:	n/a	n/a
25	MAZ	chr10:91412040-91412240	GM12878	blood:	n/a	n/a
26	SPI1	chr10:91411896-91412284	GM12891	blood:	n/a	n/a
27	ATF2	chr10:91411660-91412464	GM12878	blood:	n/a	n/a
28	BHLHE40	chr10:91411795-91412246	GM12878	blood:	n/a	n/a
29	RUNX3	chr10:91411657-91412510	GM12878	blood:	n/a	n/a
30	EP300	chr10:91411713-91412379	GM12878	blood:	n/a	chr10:91412048-91412062 chr10:91412056-91412070
31	FOXM1	chr10:91411921-91412467	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91402831..91405686-chr10:91411842..91414196,2	MCF-7	breast:
2	chr10:91410178..91412691-chr10:91459423..91462398,4	K562	blood:

Variant related genes	Relation type
ENSG00000225836	TF binding region
ENSG00000249962	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000235100	Chromatin interaction
ENSG00000138182	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59230990	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7090819	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73378990	0.85[AFR][1000 genomes]
rs73380903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73380905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73380935	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73380937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386467	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74147643	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91406400-91414200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:91406600-91413800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:91406600-91415800	Weak transcription	Colonic Mucosa	Colon
4	chr10:91407200-91418400	Weak transcription	Psoas Muscle	Psoas
5	chr10:91409000-91418800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:91411200-91412200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:91411200-91414000	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:91411200-91414400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:91411400-91412200	Enhancers	GM12878-XiMat	blood
10	chr10:91411400-91412400	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:91411400-91412400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:91411400-91412600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:91411400-91413000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:91411400-91413000	Enhancers	Primary B cells from cord blood	blood
15	chr10:91411400-91413400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:91411800-91414000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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