Variant report
| Variant | rs73380935 |
|---|---|
| Chromosome Location | chr10:91443563-91443564 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:91427349..91430030-chr10:91442278..91445461,3 | K562 | blood: | |
| 2 | chr10:91441849..91444725-chr10:91459786..91462291,3 | MCF-7 | breast: | |
| 3 | chr10:91427763..91430030-chr10:91442877..91445461,2 | K562 | blood: | |
| 4 | chr10:91434484..91437093-chr10:91443083..91444662,2 | K562 | blood: | |
| 5 | chr10:91443236..91445812-chr10:91446483..91448919,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PANK1-5 | chr10:91441037-91444539 | l_346_NR_026835 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138182 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs57659466 | 1.00[AMR][1000 genomes] |
| rs59230990 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7090819 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73379000 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73380903 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73380905 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73380937 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73386467 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74147643 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
