Variant report

Variant	rs73380919
Chromosome Location	chr7:39288543-39288544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59203809	0.86[AFR][1000 genomes]
rs73365575	1.00[AMR][1000 genomes]
rs73365594	1.00[AMR][1000 genomes]
rs73367204	1.00[AMR][1000 genomes]
rs73367211	1.00[AMR][1000 genomes]
rs73367217	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73378982	0.89[AFR][1000 genomes]
rs73380927	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39287400-39289000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr7:39287400-39290600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:39287600-39288800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:39287600-39289000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:39287800-39288600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:39287800-39289000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:39287800-39290200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:39288000-39288600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:39288000-39288600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:39288000-39288800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:39288000-39289000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:39288000-39289400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:39288000-39290000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:39288200-39288800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:39288400-39288800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:39288400-39292800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links