Variant report

Variant	rs73381286
Chromosome Location	chr15:31638050-31638051
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31637997..31638658-chr15:31727655..31728625,2	MCF-7	breast:
2	chr15:31619012..31620536-chr15:31636634..31639264,2	K562	blood:

Variant related genes	Relation type
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4779862	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv1050482	chr15:31601016-31672921	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv1048082	chr15:31610245-31667000	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	nsv1045944	chr15:31610245-31672921	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
12	nsv516681	chr15:31616674-31675453	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
13	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
15	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
16	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
17	nsv1052942	chr15:31624164-31653633	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31622600-31640200	Enhancers	Pancreas	Pancrea
2	chr15:31622800-31657400	Enhancers	Right Atrium	heart
3	chr15:31625200-31649000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr15:31626000-31638400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:31626400-31638400	Enhancers	Fetal Muscle Trunk	muscle
6	chr15:31626600-31638400	Genic enhancers	Fetal Thymus	thymus
7	chr15:31627200-31643000	Genic enhancers	Spleen	Spleen
8	chr15:31629000-31638200	Enhancers	Fetal Brain Male	brain
9	chr15:31631400-31644400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:31631400-31645000	Enhancers	Brain Substantia Nigra	brain
11	chr15:31631600-31644600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:31632200-31638400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:31632200-31639000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr15:31632200-31644400	Weak transcription	NH-A	brain
15	chr15:31632400-31639600	Enhancers	Brain Cingulate Gyrus	brain
16	chr15:31633000-31639000	Enhancers	Lung	lung
17	chr15:31633600-31638600	Genic enhancers	Thymus	Thymus
18	chr15:31633800-31639600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr15:31634000-31640000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr15:31634200-31638800	Enhancers	Right Ventricle	heart
21	chr15:31634200-31639600	Enhancers	Primary hematopoietic stem cells	blood
22	chr15:31634200-31640000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:31634400-31640200	Genic enhancers	Fetal Intestine Small	intestine
24	chr15:31634400-31644600	Enhancers	Brain Hippocampus Middle	brain
25	chr15:31634600-31638400	Enhancers	Brain Angular Gyrus	brain
26	chr15:31635000-31639600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr15:31635000-31640800	Enhancers	Stomach Mucosa	stomach
28	chr15:31635000-31644400	Weak transcription	Osteobl	bone
29	chr15:31635200-31638200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
30	chr15:31635200-31639000	Enhancers	Fetal Intestine Large	intestine
31	chr15:31635200-31639600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr15:31635400-31638800	Enhancers	Fetal Heart	heart
33	chr15:31635400-31639400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr15:31635600-31638800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr15:31635600-31644600	Weak transcription	Fetal Lung	lung
36	chr15:31635800-31638200	Enhancers	Brain Germinal Matrix	brain
37	chr15:31635800-31638400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:31636000-31639400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:31636200-31638200	Enhancers	Aorta	Aorta
40	chr15:31636400-31638400	Flanking Active TSS	GM12878-XiMat	blood
41	chr15:31636600-31638400	Enhancers	HSMMtube	muscle
42	chr15:31636600-31638600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr15:31636600-31640000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr15:31636800-31638400	Enhancers	Brain Anterior Caudate	brain
45	chr15:31636800-31638800	Genic enhancers	Monocytes-CD14+_RO01746	blood
46	chr15:31636800-31640200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr15:31637000-31638600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:31637000-31639000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:31637000-31640000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr15:31637200-31638600	Flanking Active TSS	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links