Variant report

Variant	rs73383111
Chromosome Location	chr6:27568429-27568430
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73383122	1.00[AMR][1000 genomes]
rs73383127	1.00[AMR][1000 genomes]
rs73385130	1.00[AMR][1000 genomes]
rs73387078	1.00[AMR][1000 genomes]
rs73387092	1.00[AMR][1000 genomes]
rs73397375	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399320	1.00[AMR][1000 genomes]
rs73401247	1.00[AMR][1000 genomes]
rs73401252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9688562	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1030256	chr6:27477726-27605842	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1025862	chr6:27480227-27605321	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1017347	chr6:27483816-27605842	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1025572	chr6:27487852-27604454	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv538167	chr6:27487852-27604454	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv883509	chr6:27492906-27586181	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1018107	chr6:27503525-27596736	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv538168	chr6:27503525-27596736	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27563000-27568800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:27567800-27568600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr6:27568000-27568800	Weak transcription	HMEC	breast
4	chr6:27568000-27569200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:27568000-27569200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:27568000-27570000	Active TSS	Hela-S3	cervix
7	chr6:27568200-27568600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
8	chr6:27568200-27568800	Enhancers	HepG2	liver
9	chr6:27568200-27569000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:27568200-27571200	Active TSS	A549	lung
11	chr6:27568400-27568600	Flanking Active TSS	GM12878-XiMat	blood
12	chr6:27568400-27568800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:27568400-27569000	Bivalent/Poised TSS	Primary T killer memory cells from peripheral blood	blood
14	chr6:27568400-27569600	Active TSS	Placenta	Placenta
15	chr6:27568400-27570400	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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