Variant report
| Variant | rs73383577 |
|---|---|
| Chromosome Location | chr8:130298653-130298654 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GSDMC-10 | chr8:130297893-130298834 | ucscGeneNc_uc010mdr_1 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000222755 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs16904020 | 1.00[AFR][1000 genomes] |
| rs16904021 | 1.00[AFR][1000 genomes] |
| rs16904024 | 1.00[AFR][1000 genomes] |
| rs56683575 | 0.95[AFR][1000 genomes] |
| rs57828019 | 0.95[AFR][1000 genomes] |
| rs73383531 | 0.89[AFR][1000 genomes] |
| rs73383539 | 0.89[AFR][1000 genomes] |
| rs73383548 | 1.00[AFR][1000 genomes] |
| rs73383550 | 1.00[AFR][1000 genomes] |
| rs73383583 | 0.95[AFR][1000 genomes] |
| rs73383590 | 0.95[AFR][1000 genomes] |
| rs73383592 | 0.95[AFR][1000 genomes] |
| rs73383596 | 0.95[AFR][1000 genomes] |
| rs73385507 | 0.80[AFR][1000 genomes] |
| rs73385508 | 0.95[AFR][1000 genomes] |
| rs73385522 | 0.95[AFR][1000 genomes] |
| rs73385524 | 0.95[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831460 | chr8:130185680-130366217 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:130291600-130305600 | Weak transcription | K562 | blood |
