Variant report

Variant	rs73383539
Chromosome Location	chr8:130269848-130269849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16904020	0.89[AFR][1000 genomes]
rs16904021	0.89[AFR][1000 genomes]
rs16904024	0.89[AFR][1000 genomes]
rs56683575	0.94[AFR][1000 genomes]
rs57828019	0.94[AFR][1000 genomes]
rs73383531	1.00[AFR][1000 genomes]
rs73383548	0.89[AFR][1000 genomes]
rs73383550	0.89[AFR][1000 genomes]
rs73383577	0.89[AFR][1000 genomes]
rs73383583	0.94[AFR][1000 genomes]
rs73383590	0.94[AFR][1000 genomes]
rs73383592	0.94[AFR][1000 genomes]
rs73383596	0.94[AFR][1000 genomes]
rs73385507	0.80[AFR][1000 genomes]
rs73385508	0.94[AFR][1000 genomes]
rs73385522	0.94[AFR][1000 genomes]
rs73385524	0.94[AFR][1000 genomes]
rs73386056	0.83[AFR][1000 genomes]
rs73386057	0.83[AFR][1000 genomes]
rs73386059	0.83[AFR][1000 genomes]
rs73386064	0.83[AFR][1000 genomes]
rs73386068	0.83[AFR][1000 genomes]
rs73386075	0.83[AFR][1000 genomes]
rs73386078	0.83[AFR][1000 genomes]
rs73386087	0.83[AFR][1000 genomes]
rs73386091	0.83[AFR][1000 genomes]
rs73386095	0.83[AFR][1000 genomes]
rs73388058	0.83[AFR][1000 genomes]
rs73388060	0.83[AFR][1000 genomes]
rs73388068	0.83[AFR][1000 genomes]
rs73388089	0.83[AFR][1000 genomes]
rs73390015	0.83[AFR][1000 genomes]
rs73390023	0.89[AFR][1000 genomes]
rs73390036	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130254000-130282200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130267200-130271400	Enhancers	Dnd41	blood
3	chr8:130267200-130274800	Weak transcription	Fetal Thymus	thymus
4	chr8:130267600-130270400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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