Variant report

Variant	rs73386057
Chromosome Location	chr8:130180464-130180465
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57600099	0.90[AFR][1000 genomes]
rs73383531	0.83[AFR][1000 genomes]
rs73383539	0.83[AFR][1000 genomes]
rs73386056	1.00[AFR][1000 genomes]
rs73386059	1.00[AFR][1000 genomes]
rs73386064	1.00[AFR][1000 genomes]
rs73386068	1.00[AFR][1000 genomes]
rs73386075	1.00[AFR][1000 genomes]
rs73386078	1.00[AFR][1000 genomes]
rs73386087	1.00[AFR][1000 genomes]
rs73386089	0.90[AFR][1000 genomes]
rs73386091	1.00[AFR][1000 genomes]
rs73386095	1.00[AFR][1000 genomes]
rs73388058	1.00[AFR][1000 genomes]
rs73388060	1.00[AFR][1000 genomes]
rs73388068	1.00[AFR][1000 genomes]
rs73388089	1.00[AFR][1000 genomes]
rs73388098	0.95[AFR][1000 genomes]
rs73390005	0.95[AFR][1000 genomes]
rs73390007	0.95[AFR][1000 genomes]
rs73390008	0.95[AFR][1000 genomes]
rs73390011	0.95[AFR][1000 genomes]
rs73390015	1.00[AFR][1000 genomes]
rs73390023	0.95[AFR][1000 genomes]
rs73390036	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891445	chr8:130152109-130224721	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130177800-130183000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:130178800-130181400	Enhancers	Fetal Thymus	thymus
3	chr8:130179600-130180800	Enhancers	Dnd41	blood
4	chr8:130180000-130181200	Enhancers	Thymus	Thymus
5	chr8:130180200-130181200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:130180400-130181200	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:130180400-130181400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links