Variant report

Variant	rs73390005
Chromosome Location	chr8:130217242-130217243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs57600099	0.95[AFR][1000 genomes]
rs73386056	0.95[AFR][1000 genomes]
rs73386057	0.95[AFR][1000 genomes]
rs73386059	0.95[AFR][1000 genomes]
rs73386064	0.95[AFR][1000 genomes]
rs73386068	0.95[AFR][1000 genomes]
rs73386075	0.95[AFR][1000 genomes]
rs73386078	0.95[AFR][1000 genomes]
rs73386087	0.95[AFR][1000 genomes]
rs73386089	0.85[AFR][1000 genomes]
rs73386091	0.95[AFR][1000 genomes]
rs73386095	0.95[AFR][1000 genomes]
rs73388058	0.95[AFR][1000 genomes]
rs73388060	0.95[AFR][1000 genomes]
rs73388068	0.95[AFR][1000 genomes]
rs73388089	0.95[AFR][1000 genomes]
rs73388098	1.00[AFR][1000 genomes]
rs73390007	1.00[AFR][1000 genomes]
rs73390008	1.00[AFR][1000 genomes]
rs73390011	1.00[AFR][1000 genomes]
rs73390015	0.95[AFR][1000 genomes]
rs73390023	0.89[AFR][1000 genomes]
rs73390036	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891445	chr8:130152109-130224721	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv612229	chr8:130213203-130252229	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130208200-130241600	Weak transcription	Thymus	Thymus
2	chr8:130215000-130217600	Enhancers	Dnd41	blood
3	chr8:130215200-130227000	Weak transcription	Fetal Thymus	thymus
4	chr8:130217000-130218600	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links