Variant report

Variant	rs73390036
Chromosome Location	chr8:130236289-130236290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs57600099	0.80[AFR][1000 genomes]
rs73383531	0.84[AFR][1000 genomes]
rs73383539	0.84[AFR][1000 genomes]
rs73386056	0.90[AFR][1000 genomes]
rs73386057	0.90[AFR][1000 genomes]
rs73386059	0.90[AFR][1000 genomes]
rs73386064	0.90[AFR][1000 genomes]
rs73386068	0.90[AFR][1000 genomes]
rs73386075	0.90[AFR][1000 genomes]
rs73386078	0.90[AFR][1000 genomes]
rs73386087	0.90[AFR][1000 genomes]
rs73386089	0.80[AFR][1000 genomes]
rs73386091	0.90[AFR][1000 genomes]
rs73386095	0.90[AFR][1000 genomes]
rs73388058	0.90[AFR][1000 genomes]
rs73388060	0.90[AFR][1000 genomes]
rs73388068	0.90[AFR][1000 genomes]
rs73388089	0.90[AFR][1000 genomes]
rs73388098	0.85[AFR][1000 genomes]
rs73390005	0.85[AFR][1000 genomes]
rs73390007	0.85[AFR][1000 genomes]
rs73390008	0.85[AFR][1000 genomes]
rs73390011	0.85[AFR][1000 genomes]
rs73390015	0.90[AFR][1000 genomes]
rs73390023	0.95[AFR][1000 genomes]
rs73390038	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv612229	chr8:130213203-130252229	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130208200-130241600	Weak transcription	Thymus	Thymus
2	chr8:130232800-130238000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130235000-130236400	Strong transcription	Fetal Thymus	thymus
4	chr8:130235000-130238400	ZNF genes & repeats	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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