Variant report

Variant	rs73387957
Chromosome Location	chr15:34306904-34306905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16958707	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57041595	1.00[AMR][1000 genomes]
rs58108888	0.82[AFR][1000 genomes]
rs61378050	1.00[AMR][1000 genomes]
rs73374324	1.00[AMR][1000 genomes]
rs73374333	1.00[AMR][1000 genomes]
rs73374372	1.00[AMR][1000 genomes]
rs73389919	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389935	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34265400-34311800	Weak transcription	Liver	Liver
2	chr15:34274400-34311000	Weak transcription	Primary B cells from cord blood	blood
3	chr15:34278200-34310000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:34292000-34315000	Weak transcription	Aorta	Aorta
5	chr15:34294800-34315600	Weak transcription	Left Ventricle	heart
6	chr15:34302200-34311200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:34303200-34307400	Enhancers	HSMMtube	muscle
8	chr15:34304200-34319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:34304800-34310400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:34305000-34314000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:34305800-34307000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:34306600-34314400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr15:34306800-34307000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:34306800-34307200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:34306800-34307200	Enhancers	NHLF	lung
16	chr15:34306800-34307400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr15:34306800-34307400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:34306800-34307400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:34306800-34307600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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