Variant report

Variant	rs73392615
Chromosome Location	chr15:40409038-40409039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40407953..40409735-chr15:40448787..40451780,2	K562	blood:
2	chr15:40408512..40410624-chr15:40413649..40415677,2	K562	blood:
3	chr15:40400901..40404244-chr15:40406396..40409673,3	K562	blood:
4	chr15:40395962..40398718-chr15:40407616..40409672,2	K562	blood:

Variant related genes	Relation type
ENSG00000104081	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13380113	0.81[AFR][1000 genomes]
rs28605810	0.83[AMR][1000 genomes]
rs28817922	0.83[AMR][1000 genomes]
rs56971100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57774408	0.83[AMR][1000 genomes]
rs7175040	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389504	0.83[AMR][1000 genomes]
rs73389525	0.83[AMR][1000 genomes]
rs73391318	0.83[AMR][1000 genomes]
rs73392627	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40402000-40418600	Weak transcription	Right Atrium	heart
2	chr15:40406000-40409600	Enhancers	Fetal Thymus	thymus
3	chr15:40407200-40409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:40407400-40411200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr15:40407600-40409200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:40407600-40409200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:40407600-40409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:40407600-40409400	Enhancers	Thymus	Thymus
9	chr15:40408000-40409200	Enhancers	Primary T cells from cord blood	blood
10	chr15:40408000-40409400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:40408200-40409600	Enhancers	K562	blood
12	chr15:40408200-40414000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:40408200-40414200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:40408400-40409200	Enhancers	GM12878-XiMat	blood
15	chr15:40408400-40410400	Weak transcription	NHEK	skin
16	chr15:40408400-40414000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:40408400-40416800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:40408400-40417000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:40408600-40410200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:40408600-40410600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:40408600-40410600	Weak transcription	HMEC	breast
22	chr15:40408600-40414000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:40408600-40414000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr15:40408600-40414200	Weak transcription	Placenta	Placenta
25	chr15:40408600-40416600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:40409000-40409200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:40409000-40409200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:40409000-40409200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr15:40409000-40409200	Flanking Active TSS	Dnd41	blood
30	chr15:40409000-40409200	Enhancers	Hela-S3	cervix
31	chr15:40409000-40409400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr15:40409000-40409600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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