Variant report

Variant	rs73392627
Chromosome Location	chr15:40413955-40413956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28605810	1.00[AMR][1000 genomes]
rs28817922	1.00[AMR][1000 genomes]
rs56971100	0.83[AMR][1000 genomes]
rs57774408	1.00[AMR][1000 genomes]
rs7175040	0.83[AMR][1000 genomes]
rs73389504	1.00[AMR][1000 genomes]
rs73389525	1.00[AMR][1000 genomes]
rs73391318	1.00[AMR][1000 genomes]
rs73392615	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40402000-40418600	Weak transcription	Right Atrium	heart
2	chr15:40408200-40414000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:40408200-40414200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:40408400-40414000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:40408400-40416800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:40408400-40417000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:40408600-40414000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:40408600-40414000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr15:40408600-40414200	Weak transcription	Placenta	Placenta
10	chr15:40408600-40416600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:40409200-40415200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:40411000-40414400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:40411200-40414000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:40411400-40416600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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