Variant report

Variant	rs73393260
Chromosome Location	chr15:39950177-39950178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73393213	0.81[AFR][1000 genomes]
rs73393222	0.81[AFR][1000 genomes]
rs73393238	1.00[AFR][1000 genomes]
rs73395224	0.82[AFR][1000 genomes]
rs8037160	0.82[AFR][1000 genomes]
rs951373	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39938000-39957600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:39938200-39950800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:39944800-39955600	Weak transcription	Fetal Lung	lung
4	chr15:39948400-39956000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:39949000-39950400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:39949200-39950200	Enhancers	HSMM	muscle
7	chr15:39949200-39950200	Enhancers	NH-A	brain
8	chr15:39949200-39950200	Enhancers	NHDF-Ad	bronchial
9	chr15:39949200-39950400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:39949200-39950400	Enhancers	Osteobl	bone
11	chr15:39949200-39950800	Enhancers	HUVEC	blood vessel
12	chr15:39949400-39950400	Enhancers	Hela-S3	cervix
13	chr15:39949400-39954000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:39949400-39956200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:39949600-39950200	Weak transcription	HSMMtube	muscle
16	chr15:39949600-39954000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:39949800-39950200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:39949800-39950200	Enhancers	HMEC	breast
19	chr15:39949800-39950400	Enhancers	NHEK	skin
20	chr15:39950000-39953600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:39950000-39953800	Weak transcription	NHLF	lung

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