Variant report

Variant	rs8037160
Chromosome Location	chr15:39978342-39978343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39873405..39876255-chr15:39978051..39980636,2	MCF-7	breast:
2	chr15:39879533..39881128-chr15:39975849..39978589,2	MCF-7	breast:
3	chr15:39977990..39978884-chr15:40566769..40567521,2	K562	blood:
4	chr15:39978140..39978939-chr15:40048993..40049736,3	MCF-7	breast:
5	chr15:39978213..39980310-chr15:40047894..40049695,2	MCF-7	breast:
6	chr15:39977921..39978913-chr15:40047672..40049791,14	K562	blood:
7	chr15:39977207..39979159-chr15:39990602..39992278,2	K562	blood:
8	chr15:39976358..39978991-chr15:39987825..39990232,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73393238	0.82[AFR][1000 genomes]
rs73393260	0.82[AFR][1000 genomes]
rs73395217	0.81[AFR][1000 genomes]
rs73395224	1.00[AFR][1000 genomes]
rs73395242	0.81[AFR][1000 genomes]
rs73395243	0.81[AFR][1000 genomes]
rs73395252	0.81[AFR][1000 genomes]
rs8036446	1.00[YRI][hapmap]
rs8040050	1.00[YRI][hapmap]
rs951373	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39972600-39978800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:39973400-39982800	Weak transcription	Fetal Lung	lung
3	chr15:39973800-39982800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:39974200-39978400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:39974800-39985000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:39975000-39978600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:39975400-39982000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:39975400-39984400	Weak transcription	Fetal Kidney	kidney
9	chr15:39976800-39978400	Enhancers	Osteobl	bone
10	chr15:39976800-39978800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:39977000-39978400	Enhancers	HSMMtube	muscle
12	chr15:39977200-39990600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:39977600-39978600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:39978000-39978600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:39978000-39978800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:39978200-39981400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:39978200-39982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:39978200-39982800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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