Variant report

Variant	rs73394386
Chromosome Location	chr15:49611045-49611046
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49607718..49611468-chr15:49618042..49620609,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59458829	0.83[AFR][1000 genomes]
rs73390399	1.00[AMR][1000 genomes]
rs73392269	0.90[AFR][1000 genomes]
rs73394313	1.00[AFR][1000 genomes]
rs73394361	0.90[AFR][1000 genomes]
rs73398239	0.83[AFR][1000 genomes]
rs73398257	0.83[AFR][1000 genomes]
rs73398280	1.00[AMR][1000 genomes]
rs73400235	0.83[AFR][1000 genomes]
rs73408160	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49557200-49611800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:49558000-49624400	Weak transcription	Esophagus	oesophagus
3	chr15:49558200-49611800	Weak transcription	Colonic Mucosa	Colon
4	chr15:49562200-49626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:49566200-49611800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:49566600-49623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:49573600-49613000	Weak transcription	Brain Germinal Matrix	brain
8	chr15:49573800-49622200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:49576800-49611800	Weak transcription	Thymus	Thymus
10	chr15:49577800-49611600	Weak transcription	Fetal Brain Female	brain
11	chr15:49578400-49611200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:49579400-49612000	Weak transcription	HUVEC	blood vessel
13	chr15:49580600-49615600	Weak transcription	Fetal Brain Male	brain
14	chr15:49582200-49611400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:49582600-49628200	Weak transcription	Spleen	Spleen
16	chr15:49583200-49611400	Weak transcription	Small Intestine	intestine
17	chr15:49585600-49612800	Weak transcription	Fetal Thymus	thymus
18	chr15:49586000-49617000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:49586200-49611200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:49588800-49611200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:49588800-49611600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:49594000-49619400	Weak transcription	Stomach Mucosa	stomach
23	chr15:49595800-49611200	Weak transcription	Aorta	Aorta
24	chr15:49596200-49611400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:49596800-49611800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr15:49596800-49620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:49597000-49611800	Weak transcription	Brain Anterior Caudate	brain
28	chr15:49597000-49612000	Weak transcription	HepG2	liver
29	chr15:49597200-49613200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr15:49597200-49622200	Weak transcription	NH-A	brain
31	chr15:49597200-49624800	Weak transcription	Fetal Kidney	kidney
32	chr15:49597400-49624200	Weak transcription	K562	blood
33	chr15:49598200-49611800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr15:49598200-49611800	Weak transcription	Primary B cells from cord blood	blood
35	chr15:49598600-49611600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr15:49599200-49636800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr15:49601400-49611200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:49601400-49611200	Weak transcription	Pancreas	Pancrea
39	chr15:49601400-49611800	Weak transcription	Right Ventricle	heart
40	chr15:49602400-49611800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:49602400-49615400	Weak transcription	Fetal Heart	heart
42	chr15:49603600-49611800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:49603800-49611400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr15:49604000-49611400	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:49604000-49614200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:49604200-49611400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr15:49604600-49611200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:49604800-49611800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:49605400-49611800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr15:49606000-49611800	Weak transcription	Hela-S3	cervix

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