Variant report

Variant	rs59458829
Chromosome Location	chr15:49698659-49698660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73390399	0.93[AFR][1000 genomes]
rs73392269	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394313	0.83[AFR][1000 genomes]
rs73394386	0.83[AFR][1000 genomes]
rs73398239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398290	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400235	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402185	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49698400-49699200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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