Variant report

Variant	rs73398290
Chromosome Location	chr15:49723827-49723828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59458829	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73390399	0.90[AFR][1000 genomes]
rs73392269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398239	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400235	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49716200-49732200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:49716400-49737200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:49718000-49727800	Weak transcription	HSMMtube	muscle
4	chr15:49718000-49731200	Weak transcription	Left Ventricle	heart
5	chr15:49719400-49731200	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:49721000-49736200	Weak transcription	Right Ventricle	heart
7	chr15:49721800-49726200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:49721800-49730000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:49722400-49726000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:49722600-49724200	Genic enhancers	Osteobl	bone
11	chr15:49722600-49725400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:49722600-49725800	Weak transcription	Ovary	ovary
13	chr15:49722600-49727200	Weak transcription	Fetal Lung	lung
14	chr15:49722800-49725400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:49722800-49726000	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:49722800-49728200	Weak transcription	Fetal Stomach	stomach
17	chr15:49723200-49725800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:49723200-49726200	Weak transcription	Fetal Heart	heart
19	chr15:49723800-49725800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:49723800-49725800	Weak transcription	NHDF-Ad	bronchial
21	chr15:49723800-49727400	Weak transcription	NHLF	lung

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