Variant report

Variant	rs73395795
Chromosome Location	chr7:87770398-87770399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11974320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58475358	1.00[AMR][1000 genomes]
rs58485074	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011962	1.00[AMR][1000 genomes]
rs73393845	1.00[AMR][1000 genomes]
rs73395791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397606	1.00[AMR][1000 genomes]
rs7792733	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7801265	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv532148	chr7:87760675-88149417	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87741200-87782600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:87753400-87775200	Weak transcription	Dnd41	blood
3	chr7:87757600-87770400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:87762400-87782600	Weak transcription	GM12878-XiMat	blood
5	chr7:87764600-87775600	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:87767200-87775800	Weak transcription	Left Ventricle	heart
7	chr7:87767400-87796400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:87767600-87781200	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:87769200-87789200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:87769400-87770400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:87769400-87770800	Enhancers	Fetal Intestine Large	intestine
12	chr7:87769400-87771600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr7:87769600-87770400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:87769800-87770600	Enhancers	Fetal Kidney	kidney
15	chr7:87770000-87770400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:87770000-87770800	Enhancers	Fetal Intestine Small	intestine
17	chr7:87770200-87770400	Enhancers	Brain Germinal Matrix	brain
18	chr7:87770200-87770600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:87770200-87770600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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