Variant report

Variant	rs73397606
Chromosome Location	chr7:87820915-87820916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:87814091..87817944-chr7:87819491..87822841,4	K562	blood:
2	chr7:87814914..87816851-chr7:87819491..87821079,2	K562	blood:
3	chr7:87819551..87822233-chr7:87830249..87832117,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11974320	1.00[AMR][1000 genomes]
rs58475358	1.00[AMR][1000 genomes]
rs58485074	1.00[AMR][1000 genomes]
rs61011962	1.00[AMR][1000 genomes]
rs73393845	1.00[AMR][1000 genomes]
rs73395791	1.00[AMR][1000 genomes]
rs73395795	1.00[AMR][1000 genomes]
rs7792733	1.00[AMR][1000 genomes]
rs7801265	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv532148	chr7:87760675-88149417	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87776200-87831600	Weak transcription	Left Ventricle	heart
2	chr7:87796800-87830200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:87801000-87832200	Weak transcription	Fetal Lung	lung
4	chr7:87809600-87826600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:87809800-87826600	Weak transcription	Primary T cells from cord blood	blood
6	chr7:87809800-87830200	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:87811800-87826400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:87812000-87832200	Weak transcription	Fetal Brain Female	brain
9	chr7:87812400-87822200	Weak transcription	Brain Angular Gyrus	brain
10	chr7:87814200-87829800	Weak transcription	GM12878-XiMat	blood
11	chr7:87814400-87833400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:87814600-87826600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr7:87815000-87831400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:87815400-87823000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:87815400-87829800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:87815600-87826000	Weak transcription	Brain Anterior Caudate	brain
17	chr7:87815600-87829200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:87815600-87829600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:87815600-87829800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:87815600-87829800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:87815800-87826600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:87815800-87829000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:87815800-87829600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr7:87816000-87826800	Weak transcription	Dnd41	blood
25	chr7:87816200-87821200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:87816400-87829800	Weak transcription	Brain Substantia Nigra	brain
27	chr7:87816400-87830000	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:87816800-87821400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:87817200-87832400	Weak transcription	Aorta	Aorta
30	chr7:87817800-87821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:87820600-87822000	Enhancers	Brain Germinal Matrix	brain
32	chr7:87820800-87822400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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