Variant report

Variant	rs73396158
Chromosome Location	chr15:39156493-39156494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39109642..39110205-chr15:39156134..39156758,2	MCF-7	breast:
2	chr15:39154715..39156737-chr15:39157006..39160001,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs66570438	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv832975	chr15:39011915-39227590	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1054810	chr15:39019900-39578526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv542359	chr15:39019900-39578526	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1039615	chr15:39118263-39157687	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1046027	chr15:39126735-39159867	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1040746	chr15:39126735-39327690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv904090	chr15:39138908-39347192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39152800-39160800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:39153000-39156600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:39153200-39156600	Weak transcription	Placenta	Placenta
4	chr15:39153600-39156600	Weak transcription	Adipose Nuclei	Adipose
5	chr15:39153800-39159800	Weak transcription	Fetal Intestine Large	intestine
6	chr15:39154200-39159600	Weak transcription	Fetal Intestine Small	intestine
7	chr15:39154400-39159000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:39154800-39156600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:39155200-39156600	Weak transcription	HSMMtube	muscle
10	chr15:39155400-39158200	Enhancers	Ovary	ovary
11	chr15:39155400-39172600	Weak transcription	Pancreas	Pancrea
12	chr15:39155600-39156800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:39155800-39156600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:39156400-39156600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:39156400-39156800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:39156400-39156800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:39156400-39156800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:39156400-39156800	Enhancers	Small Intestine	intestine
19	chr15:39156400-39156800	Enhancers	NHDF-Ad	bronchial
20	chr15:39156400-39157000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:39156400-39157200	Enhancers	Fetal Heart	heart
22	chr15:39156400-39157400	Enhancers	Left Ventricle	heart
23	chr15:39156400-39157800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:39156400-39157800	Enhancers	Fetal Stomach	stomach
25	chr15:39156400-39158000	Enhancers	HSMM	muscle
26	chr15:39156400-39158200	Enhancers	Osteobl	bone
27	chr15:39156400-39158600	Enhancers	NHLF	lung

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