Variant report

Variant	rs73396219
Chromosome Location	chr22:31752989-31752990
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16989439	1.00[AMR][1000 genomes]
rs16989458	1.00[AMR][1000 genomes]
rs16989527	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73392247	1.00[AMR][1000 genomes]
rs73392299	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394316	1.00[AMR][1000 genomes]
rs73394338	1.00[AMR][1000 genomes]
rs73394364	1.00[AMR][1000 genomes]
rs73394391	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396214	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396224	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv3333136	chr22:31704947-31758417	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31744000-31762200	Weak transcription	Right Atrium	heart
2	chr22:31752600-31753000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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