Variant report

Variant	rs73396747
Chromosome Location	chr11:8077045-8077046
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2360078	0.89[AFR][1000 genomes]
rs57550540	0.89[AFR][1000 genomes]
rs58474311	0.84[AFR][1000 genomes]
rs60339726	0.84[AFR][1000 genomes]
rs73396730	0.84[AFR][1000 genomes]
rs73396739	0.84[AFR][1000 genomes]
rs73396753	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8075800-8090000	Weak transcription	Spleen	Spleen
2	chr11:8076200-8078800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:8076200-8078800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:8076400-8077600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:8076400-8077800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:8076400-8078200	Enhancers	Fetal Brain Male	brain
7	chr11:8076600-8077400	Weak transcription	Brain Angular Gyrus	brain
8	chr11:8076600-8077600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:8076600-8078200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:8076800-8078600	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:8076800-8078800	Enhancers	Right Ventricle	heart
12	chr11:8076800-8079400	Enhancers	Fetal Stomach	stomach
13	chr11:8077000-8078600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links