Variant report

Variant	rs7339884
Chromosome Location	chr1:79310099-79310100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:79281703..79284146-chr1:79308021..79310225,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11799779	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11799869	1.00[AMR][1000 genomes]
rs11800738	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801058	1.00[AMR][1000 genomes]
rs11801068	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11802443	1.00[AMR][1000 genomes]
rs11804647	1.00[AMR][1000 genomes]
rs11805804	1.00[AMR][1000 genomes]
rs11806813	1.00[AMR][1000 genomes]
rs11807326	1.00[AMR][1000 genomes]
rs11807346	1.00[AMR][1000 genomes]
rs11807833	1.00[AMR][1000 genomes]
rs11808232	1.00[AMR][1000 genomes]
rs11810042	1.00[AMR][1000 genomes]
rs11811821	1.00[AMR][1000 genomes]
rs11812069	1.00[AMR][1000 genomes]
rs1489388	1.00[AMR][1000 genomes]
rs17102521	1.00[AMR][1000 genomes]
rs17102524	1.00[AMR][1000 genomes]
rs17102548	1.00[AMR][1000 genomes]
rs17102553	1.00[AMR][1000 genomes]
rs17102559	1.00[AMR][1000 genomes]
rs17102561	1.00[AMR][1000 genomes]
rs17102563	1.00[AMR][1000 genomes]
rs17102566	1.00[AMR][1000 genomes]
rs17102583	1.00[AMR][1000 genomes]
rs17102585	1.00[AMR][1000 genomes]
rs1844318	1.00[AMR][1000 genomes]
rs1906828	1.00[AMR][1000 genomes]
rs1906829	1.00[AMR][1000 genomes]
rs1906830	1.00[AMR][1000 genomes]
rs57126585	1.00[AMR][1000 genomes]
rs57178777	1.00[AMR][1000 genomes]
rs58061451	1.00[AMR][1000 genomes]
rs58435051	1.00[AMR][1000 genomes]
rs60091606	1.00[AMR][1000 genomes]
rs60340422	1.00[AMR][1000 genomes]
rs60640721	1.00[AMR][1000 genomes]
rs61126418	1.00[AMR][1000 genomes]
rs61665004	1.00[AMR][1000 genomes]
rs61712345	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv526221	chr1:79197624-79487080	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv817535	chr1:79203834-79473089	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999624	chr1:79230028-79448222	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv535013	chr1:79230028-79448222	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv546619	chr1:79233493-79614989	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1000656	chr1:79303750-79337233	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1003295	chr1:79303750-79344930	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79307200-79310200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:79307200-79310200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:79307400-79317200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:79309800-79310400	Enhancers	Osteobl	bone

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